Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60459g00022 ATGCCACCTGGTGACACACCTTCAAAGCCTACTGCAACAACAAAAACAAAAACATGCTCATCACCTAATACAAAGCATCATGACAATTCCGACCAACAGGGTGGTGGGGGTGGTGGAGGTGGTGGCCGGAAAACCACAAAGGCAGCAGCAGCAGAACAAGGACTAAAGTGCCCTCGATGCGACTCACCCAACACCAAATTCTGCTACTATAACAATTACAGCCTCACGCAGCCACGCCACTTCTGCAAGACTTGCCGCCGCTACTGGACAAAAGGAGGAGCCCTCCGCAACGTCCCCATAGGCGGTGGTTGCCGCAAAAACAGGAAAGGCAAGCCCCCATCTTCCTCCTCCATCTCTTACTCAAGAGTACCATTTTCATGTGACTCCTCCAGGGACTCTGGTTCCTCCTCTGACCACCTCGCTGGCCTTAGGTACCTCCATGGACTTTCTTCTCCACCCATGGATTTTCACCTTGGAGGCTTAACTTTCCCTGTCCCTTCTAGGCTGCAACCTCCAATGGCTACTACTACTGCTGCTGCTTTCTATAACAACTACTTGTCTTCTTTTGGGGATGTGGTTCCCGGAGCTACTACTACTACTTGTGCTCCTGCTTCTTCCGCCATTGATCCCTTAGGTAGTTCTTTGATTGGTCTCAACTATCCGTTTTGTTCTTCAGATGGAAGTGGTGGTGGTGGTGCAATAATCCATGGTAATGTTAATAATAATAATAACTTTGAGGGTAGTAGTAGCCTTGCGTCTTCGATTGAGTGTTTGAGTTCCTTGAACCAAGACTTGCATTGGAAGCTTCAGCAGCAAAGGTTGGCAATGCTGTTTGTCGGTGAAGACAACCATAACCACAACAACAACAGCTTTTCTCCCGTGGTTGTTGATCTTGATAACCACCAGAAGCAGCAGCAGCAGAGAGTCCAACCGATTTTATTTCAGAATCTTGAAATTTCAAAGGTAGATGCTCCTGTAGATGCAGATAGTAGAGCCACAGAATGGTTCTTTGGGAATTCTCATGCTCCTCCTACAAGAAGCGGTTGCAATAATAATAATGGGAATGAAACTAACTGGATGATGAGTGGTAGCGGCGTCCATCTCCATGGTTGGCCTGATTTGCAGCCGCACCAACACTACAGTTCTTTGCCCTAG 1155 0.4779 MPPGDTPSKPTATTKTKTCSSPNTKHHDNSDQQGGGGGGGGGRKTTKAAAAEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNRKGKPPSSSSISYSRVPFSCDSSRDSGSSSDHLAGLRYLHGLSSPPMDFHLGGLTFPVPSRLQPPMATTTAAAFYNNYLSSFGDVVPGATTTTCAPASSAIDPLGSSLIGLNYPFCSSDGSGGGGAIIHGNVNNNNNFEGSSSLASSIECLSSLNQDLHWKLQQQRLAMLFVGEDNHNHNNNSFSPVVVDLDNHQKQQQQRVQPILFQNLEISKVDAPVDADSRATEWFFGNSHAPPTRSGCNNNNGNETNWMMSGSGVHLHGWPDLQPHQHYSSLP 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60459g00022 384 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Stsc60459g00022 384 MobiDBLite consensus disorder prediction 1 47 - -
Stsc60459g00022 384 Pfam Dof domain, zinc finger 53 109 IPR003851 GO:0003677|GO:0006355
Stsc60459g00022 384 MobiDBLite consensus disorder prediction 100 122 - -
Stsc60459g00022 384 MobiDBLite consensus disorder prediction 8 31 - -
Stsc60459g00022 384 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 33 259 IPR045174 GO:0003700|GO:0006355
Stsc60459g00022 384 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60459g00022 Stsc-Chr60459 120879 122217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60459g00022 45 384 C2C2-Dof Transcription Factor Family AT5G65590 37.921 5.20e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc60459g00022 zf-Dof 6.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60459g00022 - - ahf:112791714 517.309