Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60459g00021 ATGTGGCTACTCACTATAAAGAATGGAGATCATAATCATGAACCATTGAAAGACATGTCTCAACATCCTTATGGTCCACGTTTCACTCAGGAAGAAGTCAAACAAATTAAACTTATGACTCAAGCTGGTATAAAACCTCGTCAAGTGCTTAAAGCTCTCAAGCAAAGCAACCCAGAACTGCAGTCAACACCACGGCATTTGTACAATCTCAAAGCAAAGATTCGTCAGGGAAATCTATCAGACAAAACCTTTAAGTCATGGAGGCCAAATAGATCTATGTCTGTTGAGGGGAACAACAGTTCATCTGATGGTTCATTAAACCAAAACTACCAGCTGGTCCCTAATTTTGTTGGAGGTAAATGTGTAGATTCTCGAGGTTGTCCAGTTGCTAATGTTACAAATCCTGCATCACAAGAAGTTGTATCTCAAGTTCCTTTGTCCACATATGAAGAGTTTAAAGCAGCAGTTGTTGCAGCCAAGCAGGCGTTTCCTTCATGGAAAAACACTCCTATTACCACTCGTCAACGTATTATGTTTAAACTTCAGGATCTTATCCGCAGAGATATTGATAAGCTTTCCATGAACATCACCATAGAACAGGGAAAGACATTAAAGGGTGCCAGAGAAGATGTGCTTCATGGTTTAGAGATGGTAGAGCATGCTTGTGGGATGGCAAATCGGCAAATGGGAGAATTTGTTCCTAATGCTTGTAACGGAATTGATACATACTGCATCAGAGAGCCCCTTGGAGTTTGTGCTGGAATATGTTCCATTAACTTTCCTGCAATTACACCCTTGTGGATGTTCCCTATTGCGATAACATGCGGCAACACTTTTATTTTTAAGCCATGTGAAAATAATCCAGGAGCTTCAATGATACTTGCAGCATTAGCAACAGAAGCTGGTTTTCCAGATGGTGTTTTAAACATTGTTCATGGAACTCATGAGATCGTTCATTACATATGCAATGATGAGGATATAAAAGCTGTATCATTCAATGGTTCAATTGCATTGAATGCAGGTAGCATAAATCATGTAGTTGTTATGCCAGATGCTTGCTTGGATGCTACTTTAGATGCCCTTGTTTCTGCTGGTTTCCGTGCAGCAGGAGAAAGGTGCATGGCTTTAAACACGGTTATCTTTGTGGGAGGTTCAACGCCTTGGGAAGAAGAATTGGTGCAGCGTGCCAAAGCACTTAGAGTGAATGCAGGAACAGATCCTGATGCAGATCTAGGTCCAGTTATTAGCAAAGAGGCAAAAGATAGGATATGTGGACTAGTTCAGAACGCTGTTGAAAATGGTGCAAGACTCCTACTTGATGGGAGGCACATTGTGGTGCCTGGATGTGAGAAAGGAAATTTTGTTGGCCCTACTATCTTATGTGATGTCTCAACCAACATGGAGTGTTACAAGGAAGAAATTTTTGGACCAGTTCTACTTTGCATGCAGGCTGACAACCTAGATGAAGCTATATCAATAATAAATAAAAACAGATATGGAAATGGAGCTTCCGTCTTCACCAAATCTGGTATTGTTGCTAGGAAGTTCCAACATGAGATTGACGCTGTACTGGTTGGGATCAATGTGCCTGTACCTATTCCGTTACCATTTTCCTCTAATGATTCAAAAGCATCTTTTGCCGGGGATTTCAATTTTTGTGGAAAAACAGGAGTACAATTTTATACCAAAATTAAAAAAGTGGCCCAAAAATGGAAGGATTTCCCAAGTCTAGGAACTTTACCTGCTGCATGTCCATCTGAGAGAGATTCATCTGGGCAATTGGCACCTCAATCATTGCCCTTGGACTTTGAGAATAATTCACCAACCTATGAAGTGCAACTAGTGATTCCTGATGTAAATATACAGAACACAGCTATCTCATCTGTGACAACACCAACTGATAGGCAAGATGTTTCCCTGGTATTATCGCCAACATCACAGGCATCAGAGAGGGTTGGTCCTGCAACATCTCAAAGAAGCAAGACTATTCCCGGAATGTCCGAGCAGAGTCATGTCACTTCATCTCAGATGAATGTAAACTTAACTGCAGCATCCCAAAGGGCTGATACCTCTACTACAGCTCTGAAATCAGATGGAATGAATATACATGTCTATGACCCATGA 2124 0.411 MWLLTIKNGDHNHEPLKDMSQHPYGPRFTQEEVKQIKLMTQAGIKPRQVLKALKQSNPELQSTPRHLYNLKAKIRQGNLSDKTFKSWRPNRSMSVEGNNSSSDGSLNQNYQLVPNFVGGKCVDSRGCPVANVTNPASQEVVSQVPLSTYEEFKAAVVAAKQAFPSWKNTPITTRQRIMFKLQDLIRRDIDKLSMNITIEQGKTLKGAREDVLHGLEMVEHACGMANRQMGEFVPNACNGIDTYCIREPLGVCAGICSINFPAITPLWMFPIAITCGNTFIFKPCENNPGASMILAALATEAGFPDGVLNIVHGTHEIVHYICNDEDIKAVSFNGSIALNAGSINHVVVMPDACLDATLDALVSAGFRAAGERCMALNTVIFVGGSTPWEEELVQRAKALRVNAGTDPDADLGPVISKEAKDRICGLVQNAVENGARLLLDGRHIVVPGCEKGNFVGPTILCDVSTNMECYKEEIFGPVLLCMQADNLDEAISIINKNRYGNGASVFTKSGIVARKFQHEIDAVLVGINVPVPIPLPFSSNDSKASFAGDFNFCGKTGVQFYTKIKKVAQKWKDFPSLGTLPAACPSERDSSGQLAPQSLPLDFENNSPTYEVQLVIPDVNIQNTAISSVTTPTDRQDVSLVLSPTSQASERVGPATSQRSKTIPGMSEQSHVTSSQMNVNLTAASQRADTSTTALKSDGMNIHVYDP 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60459g00021 707 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 348 574 IPR016163 GO:0016620
Stsc60459g00021 707 SUPERFAMILY ALDH-like 109 573 IPR016161 GO:0016491
Stsc60459g00021 707 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 1 577 IPR010061 GO:0004491
Stsc60459g00021 707 MobiDBLite consensus disorder prediction 645 672 - -
Stsc60459g00021 707 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 341 540 - -
Stsc60459g00021 707 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 117 344 - -
Stsc60459g00021 707 Pfam Aldehyde dehydrogenase family 130 567 IPR015590 GO:0016491
Stsc60459g00021 707 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 366 377 IPR016160 GO:0016491
Stsc60459g00021 707 MobiDBLite consensus disorder prediction 81 105 - -
Stsc60459g00021 707 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 108 347 IPR016162 GO:0016491
Stsc60459g00021 707 CDD ALDH_F6_MMSDH 113 571 IPR010061 GO:0004491
Stsc60459g00021 707 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 115 571 IPR010061 GO:0004491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60459g00021 Stsc-Chr60459 106832 113267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60459g00021 113 567 Aldehyde Dehydrogenase Gene Family AT2G14170 65.751 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60459g00021 K00140 - gmx:100796803 1007.67