Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60459g00017 ATGCAAGAGTTTAGGGGTAAGTTGCAGAAGGCGATAAAGAAAGCAAATCCAGACATAGATTGGGGGGTATTATATAACTACAACTACTACAACAACAAAAAGGAGCTTCCATCTAAATCAGCTTATTCCGATGAATTCCCATCGCCACGGGGCATGTTCGACGCTATGTCCACCGCTGACTCCGACTACAGCTCCCGCGGGAGCAGCAACAACAACAGCAGCCTGCATTCCCCGAGGAATAATCGTCCTCCGTCGTCGGGTTTGCCAAAGCCTAACAACGGCACCAATAAGGTGGACCAGCAGCAGCAGTGGAGGGCAATGATAGAGGCCCTGAGGTTCAAGAACGTTAGAAGGTTCTCCAACATTCCCTTGCTGGCCGCTAGCTACGAGATCTCTAGGAAGAACATAAGGAAGAAGGTGTCTCGCAAGACCAACGGCGAAGACGATGACGATCTTCCCATAGATCTTGATAGCATCCCTACGAAGCCTTCATGGCGAAATTTCCCTTACGCTGATCTGGCTGCTGCCACCGATAATTTCTCCCCGGAGAACATGCTTGGAAAAGGTGGCCATGCTGAAGTGTACAGAGGACGCTTACCGGACGGTCAGATTGTAGCAGTGAAGAGGCTGATGAATAATGGGAAGGAAATTGAGGACCAAGTTGGTGATTTCTTGTCAGAACTTGGAATCATTGCTCACATAAACCACCCGAATGCTACACACCTTCTTGGATTTGGCATTGACAATGGACTCTACTTTGTCCTACGTTACGCTCCTCGTGGCAGCATCGCTTCTTTACTCTTTGGTTCTCAATGCTTGGAGTGGAATGCAAGGTTCAAGCTAGCTCTTGGGGTCGCCAAAGGATTGAAGTACCTTCATCATGATTGTCCTAGAAGAATCATTCACCGAGACATCAAAGCCTCTAACATCTTACTCGACGAGAACTATGAAGCTGAGATTTCGGATTTCGGATTGGCAAAGTGGCTTCCAGATCAGTGGGAACATCATGTTGTGTTCCCAATTGAAGGCACATTCGGATATTTGGCTCCAGAGTACTTTATGCACGGACTTGTGGATGAGAAGACTGATGTGTTTGCATTTGGGGTTCTGTTATTGGAGCTCCTAACTGGTCGGCGCGCGGTTGATTCAAACAGCAGGGAGAGTCTTGTCATCTGGGCAAAACCACTGTTGGATTCAAAGCAGATTGAGGAAATAGTAGATCCAAAATTAGGAGATCAGTATGACCTTACACAAATGAACAATGCTATGGCAACGGCTTCTCTCTGTGTCCACCATAAACCCTCCATGCGCCCATACATGAACATGGTGGTGAAGCTGCTCAAGGGAGAAGATGTATCAGCTGATGAGATCATTCAAAGATCATCAATAATATCCCCAAAATCACTATTAGTAGATGCATGTGACCTTGAAGATTATACTTGCTCTAATTACTTGAATGATATTAATCGCCACAAGCAATTAATAATGGAGTGA 1494 0.4618 MQEFRGKLQKAIKKANPDIDWGVLYNYNYYNNKKELPSKSAYSDEFPSPRGMFDAMSTADSDYSSRGSSNNNSSLHSPRNNRPPSSGLPKPNNGTNKVDQQQQWRAMIEALRFKNVRRFSNIPLLAASYEISRKNIRKKVSRKTNGEDDDDLPIDLDSIPTKPSWRNFPYADLAAATDNFSPENMLGKGGHAEVYRGRLPDGQIVAVKRLMNNGKEIEDQVGDFLSELGIIAHINHPNATHLLGFGIDNGLYFVLRYAPRGSIASLLFGSQCLEWNARFKLALGVAKGLKYLHHDCPRRIIHRDIKASNILLDENYEAEISDFGLAKWLPDQWEHHVVFPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLELLTGRRAVDSNSRESLVIWAKPLLDSKQIEEIVDPKLGDQYDLTQMNNAMATASLCVHHKPSMRPYMNMVVKLLKGEDVSADEIIQRSSIISPKSLLVDACDLEDYTCSNYLNDINRHKQLIME 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60459g00017 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672|GO:0006468
Stsc60459g00017 497 SUPERFAMILY Protein kinase-like (PK-like) 165 471 IPR011009 -
Stsc60459g00017 497 Gene3D Phosphorylase Kinase; domain 1 154 257 - -
Stsc60459g00017 497 PANTHER OS08G0249100 PROTEIN 47 465 IPR046958 -
Stsc60459g00017 497 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 259 461 - -
Stsc60459g00017 497 ProSiteProfiles Protein kinase domain profile. 180 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60459g00017 497 Gene3D Transferase(Phosphotransferase) domain 1 259 463 - -
Stsc60459g00017 497 MobiDBLite consensus disorder prediction 58 101 - -
Stsc60459g00017 497 ProSitePatterns Protein kinases ATP-binding region signature. 186 208 IPR017441 GO:0005524
Stsc60459g00017 497 Pfam Protein kinase domain 183 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60459g00017 497 MobiDBLite consensus disorder prediction 53 101 - -
Stsc60459g00017 497 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 155 257 - -
Stsc60459g00017 497 SMART serkin_6 180 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60459g00017 Stsc-Chr60459 76480 78408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60459g00017 166 453 Receptor kinase-like Gene Family AT1G60800 41.000 1.13e-68 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc60459g00017 Pkinase 2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60459g00017 - - gmx:100794225 627.476