Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60459g00002 ATGGAAGATGAGAACTTTGACCCTGCAACCTCAAGCCTTCTGTGTCTGGAAAACAATAACACCTGCTTTGATGATTTTGAATGTAGTGCCGCAGATGGGTACCACAAAAAACTTAACTTTAACGATCATGGATCGGAACCATTCGTGGGTTTTCTGGTGCTGACTGATGAAACTTTTGGGGTTATGGTTGAGAAGGAGAGGGACTTTTTGCCCTCTGCTGATTACCTCAGGAGGATCCTTGCTGGGGATTTAGACTTTGTTGTTAGAAAGGACGCTCTTGATTGGATTTGTAAGGCTCATGCTTATTATGGTTTTGGAACCAGTTGCTTTTGTCTATCTGTGAACTACTTGGATCGGTTCCTATCAGCTCGTGATATACCAAGGGACAAAAATTGGGCTGTTCAGTTGTTAGCTGTTGCTTGTTTATCAATTGCAGCTAAGATGGAGGAGACTAAAATGCCGCCCCATATTATAGATATGCAGGCTGACGAAACAACAGTTGTGTTTGATGCTAAAACTATTCAAAGAATGGAACTGATGATATTAAGCACATTGAGATGGAAAATGCAAGCTTTAACTCCATGTTCCTATATGGACTACTTCCTTGGCAAGATCACTTGTGAGCAGCATCCGACAAAGTCGTTGATTGTGAGATCAATGGAGCTGATCCTTCAAACTATCAGATGTGTTGAATTCTTGGAGTTTCGGCCTTCTGAAATTGCCGCAGCAGTTGCGATTTCTGTTTCAAGGGAATCACAAGGAATAGAGATTGATAAAGCCTTGAATTGTTTTGCCATCGCGCAGAAGGACAGAGTCTTGAAGTGCGTTGAACTGATCAGAGACTTGGCCTTGATCAAAGTTTCGGCCAATTCGAATGGCAACTTAGCTCCATTAACGCCGCAAAGCCCCCTCGGGGTGCTCGATGCGACATGCTTGAGCTATAGGAGTGATGAATCAACAACAGGTGGTTCATTTACAGACTCTTTCCATTATAGTCCAAGTGCTAAGAGGTGTAGATCAGATAATGGACCATCTAATGAGAATTTCAAGTCATGA 1056 0.4261 MEDENFDPATSSLLCLENNNTCFDDFECSAADGYHKKLNFNDHGSEPFVGFLVLTDETFGVMVEKERDFLPSADYLRRILAGDLDFVVRKDALDWICKAHAYYGFGTSCFCLSVNYLDRFLSARDIPRDKNWAVQLLAVACLSIAAKMEETKMPPHIIDMQADETTVVFDAKTIQRMELMILSTLRWKMQALTPCSYMDYFLGKITCEQHPTKSLIVRSMELILQTIRCVEFLEFRPSEIAAAVAISVSRESQGIEIDKALNCFAIAQKDRVLKCVELIRDLALIKVSANSNGNLAPLTPQSPLGVLDATCLSYRSDESTTGGSFTDSFHYSPSAKRCRSDNGPSNENFKS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60459g00002 351 CDD CYCLIN_AtCycD-like_rpt2 193 279 - -
Stsc60459g00002 351 ProSitePatterns Cyclins signature. 89 120 IPR006671 -
Stsc60459g00002 351 MobiDBLite consensus disorder prediction 318 351 - -
Stsc60459g00002 351 Pfam Cyclin, C-terminal domain 193 288 IPR004367 -
Stsc60459g00002 351 SUPERFAMILY Cyclin-like 52 189 IPR036915 -
Stsc60459g00002 351 FunFam D6-type cyclin 186 277 - -
Stsc60459g00002 351 SMART cyclin_7 94 183 IPR013763 -
Stsc60459g00002 351 Gene3D - 72 190 - -
Stsc60459g00002 351 Pfam Cyclin, N-terminal domain 59 189 IPR006671 -
Stsc60459g00002 351 PANTHER CYCLINS 57 281 IPR039361 -
Stsc60459g00002 351 CDD CYCLIN_AtCycD-like_rpt1 88 187 - -
Stsc60459g00002 351 Gene3D - 62 278 - -
Stsc60459g00002 351 SMART Cyclin_C_2 192 301 IPR004367 -
Stsc60459g00002 351 FunFam D6-type cyclin 72 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60459g00002 Stsc-Chr60459 7806 10124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60459g00002 34 321 Core Cell Cycle Gene Families AT2G22490 47.826 1.25e-84 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60459g00002 K18810 - gmx:100800570 382.104