Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60458g00021 ATGGCAATTTCTTCAAATTGGCATGTTAAAATAGCAATAATCCTTGTTATTGTTCTTCAAAATTCAAGAACTATACATTGCCGGCACCACCATGATCATGATGATGAGAGAAACAAGGGAATTAGATTGAACAATGGATTGTTGTCCAACATGAGTAGGATTGAGTTCTCTGAAGAACAGTTCATGAAATGGGTTAACTTTGTTGGTAATCTCAATCACTCAATGTTCAAGGCTGCAAAGAACAAGCTATTTGCTTCTTACACTTTGCATGTTGATAAGAACCCTGCACTTGGTGACTTCACTTCCATTCAAGAAGCCATTGATTCTCTTCCTTCCATTAATCTTGTTAGAGTCATCATCAAGGTCCATGCAGGTCTTTACACTGAGAAAGTGAGCATCCCTCCATTGAAATCATACATAACAATAGAAGGAGAAGGTGCAGATAAAACAATTGTTCAATATGGTGACACAGCAAAAACTCTTGGCCCAAATGGGAGGCCATTGGGAACTTATGGCTCTGCTACTTTTGCTGTTAATTCACCTTATTTTATTGCAAGGAACATCACATTCAAGAACACTACTCCAGTTCCTGCACCAGGAGCAATTGGATCACAGGCAGTTGCATTGAGGATTTCAGCAGACACAGCAGCATTCTTTGGATGCAGTTTCTTGGGTGCACAAGACACACTCTATGATCACATTGGAAGACATTACTACAAGGATTGTTACATTGAAGGCTCTGTTGATTTCATATTCGGCAACGCTCTTTCTCTATTTGAGGGATGCGAGGTGCACGCGATAGCATTGAACATGGGAGCGTTAACGGCGCAAGGAAGGAGCAGCATGTTGGAGGACACAGGGTTCTCATTCGTGAACTGTAGGGTGACAGGGTCAGGGGCACTGTACCTTGGAAGGGCATGGGGACCCTTTTCTAGGGTGGTATTCGCCTACACTTATATGGACAACATTATCATTCCCAAAGGCTGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTGTTCTATGGACAATACAAATGCACAGGAGCTGGAGCAAGCTTTGCAGGGAGGGTATCATGGTCAAGGGAACTCACTGATGATGAAGCTAAACCTTTTCTTTCTCTTTCCTTTATTGATGGCACTGAATGGATCAATCTTTGA 1164 0.4235 MAISSNWHVKIAIILVIVLQNSRTIHCRHHHDHDDERNKGIRLNNGLLSNMSRIEFSEEQFMKWVNFVGNLNHSMFKAAKNKLFASYTLHVDKNPALGDFTSIQEAIDSLPSINLVRVIIKVHAGLYTEKVSIPPLKSYITIEGEGADKTIVQYGDTAKTLGPNGRPLGTYGSATFAVNSPYFIARNITFKNTTPVPAPGAIGSQAVALRISADTAAFFGCSFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCEVHAIALNMGALTAQGRSSMLEDTGFSFVNCRVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGAGASFAGRVSWSRELTDDEAKPFLSLSFIDGTEWINL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60458g00021 387 SUPERFAMILY Pectin lyase-like 85 386 IPR011050 -
Stsc60458g00021 387 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 81 386 - -
Stsc60458g00021 387 FunFam Pectinesterase 85 387 - -
Stsc60458g00021 387 Pfam Pectinesterase 98 381 IPR000070 GO:0030599|GO:0042545
Stsc60458g00021 387 ProSitePatterns Pectinesterase signature 2. 244 253 IPR033131 -
Stsc60458g00021 387 Gene3D - 84 387 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60458g00021 Stsc-Chr60458 136500 140572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60458g00021 99 385 Carbohydrate Esterase AT5G47500 51.042 1.31e-103 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60458g00021 K01051 - gmx:100793314 632.869