Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60458g00011 ATGTCGTGGCAAGCCTACGTCGATGACCACCTTCTCTGTGAAATCGAAGGCAACCACCTCTCCTCCGCCGCAATCCTCGGCCAAGACGGCTCCGTTTGGGCGCAGAGCGCTACTTTCCCTCAGTTCAAGCCTGAGGAAATTACTGCTATCATGAACGACTTTGCTGAGCCTGGATCGCTCGCCCCGACCGGCTTGTACCTCGGCGGCACGAAATATATGGTCATCCAAGGTGAGCCCGGAGCTGTCATTCGAGGGAAGAAGGGTCCTGGTGGTGTTACCATTAAGAAGACGAATCAGGCGTTGATCATCGGAATCTATGATGAACCGATGACTCCAGGGCAGTGCAACATGATTGTTGAAAGGCTGGGTGATTATCTCATTGATACGGGTCTTTAG 396 0.5303 MSWQAYVDDHLLCEIEGNHLSSAAILGQDGSVWAQSATFPQFKPEEITAIMNDFAEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIDTGL 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60458g00011 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Stsc60458g00011 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Stsc60458g00011 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Stsc60458g00011 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Stsc60458g00011 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Stsc60458g00011 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Stsc60458g00011 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Stsc60458g00011 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Stsc60458g00011 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Stsc60458g00011 131 CDD PROF 2 130 IPR005455 GO:0003779
Stsc60458g00011 131 FunFam Profilin 1 131 - -
Stsc60458g00011 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Stsc60458g00011 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Stsc60458g00011 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Stsc60458g00011 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Stsc60458g00011 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Stsc60458g00011 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Stsc60458g00011 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Stsc60458g00011 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Stsc60458g00011 131 SMART prof_2 1 131 IPR005455 GO:0003779
Stsc60458g00011 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60458g00011 Stsc-Chr60458 83041 84494 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60458g00011 1 131 Cytoskeleton Gene Families AT2G19760 79.389 1.71e-78 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60458g00011 K05759 - rcu:8265128 258.84