Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60458g00004 ATGAATAATAGTAATAGTAATAATAATAATAATAAGATAAGCAACTTGAGCTCAGTGAGCAGCTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAGTTGTGTGGAGGATCCAAGCAATGCCCCGGTTGTGGCCACAAATTCGAATCCAAACCGGATTGGCTAGGTTTACCGGCCGGAGTAAAGTTTGATCCGACAGACCAAGAACTAATCGAGCACCTCGAAGCCAAGGTGGAGTCAAAGAACATGAAATCACACCCTTTGATAGATGAGTTCATTCCCACCATTGAAGGTGAAGATGGCATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTAACAAGAGATGGGTTAAGCAAACACTTCTTCCATAGGCCTTCAAAGGCATACACAACGGGAACAAGAAAGAGGAGAAAAATTCAAAACGAATGTGACTTGCAAGGTGGAGAAACAAGGTGGCATAAAACCGGTAAAACTCGACCGGTTATGGTTAACGGAAAACAAAAGGGTTGCAAGAAGATCTTGGTTCTCTACACTAACTTCGGCAAGAATCGGAAGCCGGAGAAGACGAATTGGGTGATGCATCAATACCATTTGGGGCAACATGAGGAGGAGAAAGAGGGGGAGCTTGTTGTCTCCAAGATTTTCTATCAAACTCAGCCTAGGCAGTGTAATTGGTCGTCCGATCGGAGCGCCACCACCACCACCGCTACCGCCGAGGGGAGCGGAGAGCCGTTACAGAATAGTAGAAGGGATAGTGGGAGTGGAAGTTGTTCTTCTAAGGAGATTAATGTCGGTCACAGGGATGAGACGATGTCTGCTGTGGTTGGAATCTCCGCGAATCCAATCACGAGCTTTGCTCATCCCTTGGACATTCATCACCATCTCAAATCGGATCATTTTAGCTTCATCCCATTTAGAAAGAGCTTTGATGAGGTTGGAATAGGAGAGGCTTCAACAGCAAGAGAAGTTCAAGCATCAGGGTCATGTGAACATGAAGTAGTGCATGAACATGTAAATCATCATCATCATCATCATCAACAACAACAACAACAACAACAACAACATCATCAAATTGCTACATCGGCATTTCATATAAGTAGGCCTTCACATCCAATATCTACCTTAATATCTCCACCACCACTTCATCACACATCCATCATCCTAGATGATACTTCCTACCACCAAGTCTCCAGAATAATGCTCCAAAATGAACATTTCCAGCAACAACAGCAACATCAACAACAACATCAACATCATCAACAGCATCATCATAAAATGGGAGGAAGGTCTGCTTCTGGTTTGGAGGAACTCATAATGGGGTGCACTTCTTCTGATATCAAAGAGGAGTCATCCATCACAAACCCACAAGAAGCTGAATGGTTGAAATACTCTTCCTATTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG 1437 0.4412 MNNSNSNNNNNKISNLSSVSSSDLIDAKLEEHQLCGGSKQCPGCGHKFESKPDWLGLPAGVKFDPTDQELIEHLEAKVESKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSSDRSATTTTATAEGSGEPLQNSRRDSGSGSCSSKEINVGHRDETMSAVVGISANPITSFAHPLDIHHHLKSDHFSFIPFRKSFDEVGIGEASTAREVQASGSCEHEVVHEHVNHHHHHHQQQQQQQQQHHQIATSAFHISRPSHPISTLISPPPLHHTSIILDDTSYHQVSRIMLQNEHFQQQQQHQQQHQHHQQHHHKMGGRSASGLEELIMGCTSSDIKEESSITNPQEAEWLKYSSYWPDPDNPDHHG 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60458g00004 478 SUPERFAMILY NAC domain 52 218 IPR036093 GO:0003677|GO:0006355
Stsc60458g00004 478 ProSiteProfiles NAC domain profile. 57 218 IPR003441 GO:0003677|GO:0006355
Stsc60458g00004 478 Gene3D NAC domain 66 222 IPR036093 GO:0003677|GO:0006355
Stsc60458g00004 478 MobiDBLite consensus disorder prediction 406 430 - -
Stsc60458g00004 478 FunFam NAC domain-containing protein 73 66 222 - -
Stsc60458g00004 478 Pfam No apical meristem (NAM) protein 58 199 IPR003441 GO:0003677|GO:0006355
Stsc60458g00004 478 MobiDBLite consensus disorder prediction 339 361 - -
Stsc60458g00004 478 MobiDBLite consensus disorder prediction 446 478 - -
Stsc60458g00004 478 MobiDBLite consensus disorder prediction 225 262 - -
Stsc60458g00004 478 MobiDBLite consensus disorder prediction 446 461 - -
Stsc60458g00004 478 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 18 404 IPR044799 GO:0003700
Stsc60458g00004 478 MobiDBLite consensus disorder prediction 225 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60458g00004 Stsc-Chr60458 33259 38582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60458g00004 20 475 NAC Transcription Factor Family AT5G56620 50.418 8.17e-133 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc60458g00004 NAM 2.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60458g00004 - - gmx:100795246 723.776