Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60457g00033 ATGGCTGAAAATTATAATAGTAATGTGTTAGACCTCAACCTTGGTGGAGGGAATAATAATGGTGGTAGCCAAGGCCAAGTAGGGCAATCGCTGAGGCCGCGGTGCCCGGCGCCTTTTCTTTTGAAGACTTATGATTTGTTGGAAGAAGGCGGGGTGGCGGATGGCGGCGGTGGCGGCAAGATAGTTTCATGGAATGGAGATGGGAGTGGTTTTGTTGTGTGGTCTCCGGCTGAATTCTGTGAACTCACTTTGCCTAGATATTTCAAGCACAATAACTTCTCTAGCTTCATTCGCCAATTGAATACCTATGGATTTAAGAAAATATCATCAAAAAGATGGGAGTTCAAGCATGAGAAATTTCAGAGAGGATGTAGGGACATGCTAGTTGAGATCACAAGGAAAAAGTGCGAGCCTAGCGTGTTCCCTTCATACCTCAAGTCATCTTCAGAGGAAAATGCAACCACCTCTAATTCAATGGAAGAAAACAACAATAATAGCCATCAACTACTTATGGAGGAGAACATGAACCTTAAGAAGGAGAGGTTGGAGCTCCAAATGCAGATAGCTGAGTTTAAATCACTTGAAATGAAGTTGTTAGAGTGTCTCTCTCAAGTTATGGACAACCACCAAAATAAAAGTAGGAGACAATGTTAG 654 0.4281 MAENYNSNVLDLNLGGGNNNGGSQGQVGQSLRPRCPAPFLLKTYDLLEEGGVADGGGGGKIVSWNGDGSGFVVWSPAEFCELTLPRYFKHNNFSSFIRQLNTYGFKKISSKRWEFKHEKFQRGCRDMLVEITRKKCEPSVFPSYLKSSSEENATTSNSMEENNNNSHQLLMEENMNLKKERLELQMQIAEFKSLEMKLLECLSQVMDNHQNKSRRQC 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60457g00033 217 Coils Coil 167 194 - -
Stsc60457g00033 217 Pfam HSF-type DNA-binding 39 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60457g00033 217 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60457g00033 217 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60457g00033 217 FunFam Heat stress transcription factor A-6b 32 135 - -
Stsc60457g00033 217 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60457g00033 217 Gene3D - 33 135 IPR036388 -
Stsc60457g00033 217 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 31 208 IPR027725 -
Stsc60457g00033 217 SUPERFAMILY "Winged helix" DNA-binding domain 36 134 IPR036390 -
Stsc60457g00033 217 SMART hsfneu3 35 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60457g00033 Stsc-Chr60457 142273 144627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60457g00033 35 194 HSF AT5G62020 40.323 2.40e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc60457g00033 HSF_DNA-bind 8.1e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60457g00033 K09419 - gmx:100783723 281.952