Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60457g00032 ATGGCGTCGTTCTTCGGTTCCTCGTCGGGTTCCACATCTATGGTGGTCACCAACACGCCGTCGCAGGACCTTGCCCTTACCAACCTCGCCTTCTGTTCCTCCTCCGATCTCCGCAACTTCGCCGTCCCCAATCACCCCAACCTCTTCCTCGCCTTCATCGGCGACTCCTTCGTCTTCGCTCTCTCAGCTCATGAGAACATTCGCAGTGGCCAGATTGCTCTCAATTCCATTCAACGTCGCTGTGTTAAAGTTTCCGCTGCTGAATCCATTCCTGTCACCAGATTTGTGCCACCTGAAAACTTTGAGTTGGCATTGTTAACCCTTGACCTGGAATTCATTAAAAAAGGGGCTAAGAGTGAACAGATTGATGCTCCCCAATTGTCTAAGCAACTCCGGAAGAGGTTTGCGAACCAGGTTATGACAGTAGGGCAGAAAGTGTTATTTGAGTATCATGGAAATAATTATAGCTTCACAGTTACTCAAGCTGCTGTTGAGGGTCAAGAAAAGACTAATGCTCCTGAAAGAGGGATGATCTCAGATGACACATATGTTGTTTTCGAAACAGCACGTGATAGTGGAATCAAGATTGTCAATCAGCGGGAGGCTGCCACTAGCAACATTTTTAAGCAGAAAGAGTTTAATCTTCAGTCTCTGGGTATTGGAGGCCTGAGTGCAGAGTTTGCAGNNNNNNNNNNTTCCCGTGTTTTCCCTCCCCACGTGACATCCAAATTAGGGATCAAGCATGTGAAGGGCATGTTGCTTTATGGCCCCCCTGGAACTGGAAAAACACTTATGGCACGACAAATTGGGAAGATTCTGAATGGGAAGGAACCAAAGATTGTTAATGGCCCTGAAGTGTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTGAGGGATCTTTTTGCTGATGCTGAACAAGAGCAGAGGAGCCGAGGGGATGAAAGTGATTTGCATGTAATTATCTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCAACTCGCGATGGTACTGGAGTTCATGATAGCATTGTGAACCAGCTTCTTACTAAGATAGATGGTGTGGAGTCACTAAATAATGTTTTGCTTATTGGAATGACCAACAGAAAGGACATGCTTGATGAGGCCCTCTTAAGACCAGGGCGGTTGGAAGTCCAGGTTGAGATAAGCCTTCCTGACGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAAGATGAAAGAGAATTCTTTTCTTGCTCCTAATGTGAATCTTCAAGAGCTTGCTGCTAGAACAAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCTGTTTCATATGCTTTAAATCGACAACTGAGTCTAGAGGATCTCACGAAGCAAGTCGAGGAAGAGAATATTAAGGTTACAATGGAAGACTTTTTGAATGCACTCCATGAAGTTACTCCTGCATTTGGGGCTTCCACTGACGATCTTGAAAGATGCAGACTCCATGGCATGGTGGACTGTGGTGACCGACACAAGCACATTTATCAAAGAGCAATGCTACTTGTTGAGCAAGTAAAAGTTAGCAGAGGAAGCCCACTTGTTACTTGTCTTCTGGAAGGTTCCAGTGGCAGTGGTAAGACCGCACTTGCAGCTACTGTTGGTATTGACAGTGACTTCCCATATGTCAAGATTGTTTCAGCTGAAACAATGATTGGTCTACATGAGAGCACTAAATGTGCACAGATTATTAAGGTTTTTGAGGATGCATACAAGTCACCGTTGAGTGTTATTGTCCTTGATGACATTGAGAGGTTATTGGAGTACGTGGCCATTGGTCCCCGGTTTTCAAACTTGATTTCTCAGACACTGTTAGTTCTACTCAAACGGCTTCCTCCAAAGGGGAAAAAACTCATGGTTATTGGTACAACAAGTGAGTTGACTTTCTTGGACTCGATTGGATTTTGTGATGCTTTCTCTGTCACTTACCATGTTCCTGCCTTGAACACAAGTGATGCTAAGAAGGTCCTAGAACAGTTGAATGTTTTTGCTCATGAAGATATTGATGCTGCTGCAGAGGCATTGAATGATATGCCTATTAGGAAGCTGTACATGTTGATTGAGATGGCAGCACAAGGGGCTCAAGGTGGATCAGCAGAAGCTGTCTATTCTGGCAAAGAGAAGATCAGTATCTCTCATTTCTACGATTGCCTTCAGGATGTTGTCAGAATATAG 2220 0.4378 MASFFGSSSGSTSMVVTNTPSQDLALTNLAFCSSSDLRNFAVPNHPNLFLAFIGDSFVFALSAHENIRSGQIALNSIQRRCVKVSAAESIPVTRFVPPENFELALLTLDLEFIKKGAKSEQIDAPQLSKQLRKRFANQVMTVGQKVLFEYHGNNYSFTVTQAAVEGQEKTNAPERGMISDDTYVVFETARDSGIKIVNQREAATSNIFKQKEFNLQSLGIGGLSAEFAXXXXSRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQEQRSRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPNVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTKQVEEENIKVTMEDFLNALHEVTPAFGASTDDLERCRLHGMVDCGDRHKHIYQRAMLLVEQVKVSRGSPLVTCLLEGSSGSGKTALAATVGIDSDFPYVKIVSAETMIGLHESTKCAQIIKVFEDAYKSPLSVIVLDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLMVIGTTSELTFLDSIGFCDAFSVTYHVPALNTSDAKKVLEQLNVFAHEDIDAAAEALNDMPIRKLYMLIEMAAQGAQGGSAEAVYSGKEKISISHFYDCLQDVVRI 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60457g00032 739 FunFam Vesicle-fusing ATPase 394 481 - -
Stsc60457g00032 739 Gene3D - 9 95 - -
Stsc60457g00032 739 Gene3D - 99 196 - -
Stsc60457g00032 739 FunFam Vesicle-fusing ATPase 99 196 - -
Stsc60457g00032 739 FunFam vesicle-fusing ATPase isoform X1 490 661 - -
Stsc60457g00032 739 Gene3D - 394 486 - -
Stsc60457g00032 739 FunFam Vesicle-fusing ATPase protein 11 95 - -
Stsc60457g00032 739 Gene3D - 490 661 IPR027417 -
Stsc60457g00032 739 SMART AAA_5 248 395 IPR003593 GO:0016887
Stsc60457g00032 739 SMART AAA_5 528 666 IPR003593 GO:0016887
Stsc60457g00032 739 Pfam Cell division protein 48 (CDC48), domain 2 121 166 IPR004201 -
Stsc60457g00032 739 Pfam AAA+ lid domain 419 474 IPR041569 -
Stsc60457g00032 739 SUPERFAMILY ADC-like 11 95 IPR009010 -
Stsc60457g00032 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 708 IPR027417 -
Stsc60457g00032 739 ProSitePatterns AAA-protein family signature. 363 381 IPR003960 GO:0005524|GO:0016887
Stsc60457g00032 739 FunFam Vesicle-fusing ATPase 1 209 393 - -
Stsc60457g00032 739 SUPERFAMILY Cdc48 domain 2-like 98 201 IPR029067 -
Stsc60457g00032 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 491 IPR027417 -
Stsc60457g00032 739 Gene3D - 220 393 IPR027417 -
Stsc60457g00032 739 Pfam ATPase family associated with various cellular activities (AAA) 533 646 IPR003959 GO:0005524|GO:0016887
Stsc60457g00032 739 Pfam ATPase family associated with various cellular activities (AAA) 252 392 IPR003959 GO:0005524|GO:0016887
Stsc60457g00032 739 PANTHER VESICULAR-FUSION PROTEIN NSF 12 738 IPR039812 GO:0016887|GO:0035494
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60457g00032 Stsc-Chr60457 131169 139234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60457g00032 243 459 Calmodulin-binding Proteins AT3G56690 39.367 3.99e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60457g00032 K06027 - gmx:100779259 1272.3