Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60457g00031 ATGGCCTTTGATCATAACTACTATTCCCAGGGATTTAAAACTCTCCCAAATTCCCTCAGAGACACAGAAAATTATAACAATTCAAATGGTTGTTTCGATTGCAACATATGCTTAGACTTTGCAAACGAGCCAGTTGTCACACTCTGTGGCCATCTCTACTGCTGGCCCTGCATCTACAAATGGCTCCATGTCCAGAGCGCTTCCCTTGCCTACAACGAGCAGCCGCTATGCCCTGTCTGCAAAGCTGAAATATCCCACGCGGCAATGGTTCCCCTCTACGGCCGTGGACACAGCAACAGCAACCGCGAAGAGAAGGCAGCCTCCTGCAGGGACATTTGTGTTCCGCCGAGGCCACCTGCTTCCGGTCCCCTGTCTCTGCTGGCCATGTCTCAAAATGGCCAGCAGCGGCTTCCTTATCGCAATGCTTACCGGGGTCAACACTTTAGCCTTGCTCAAGAGGACGACAACGCTTCACAAATGCTGAATCTTGGTGCTTCCATATCGCCGGCATTCTTCCCCCGCCCTATGGTTGGAATGTTTGGGGAGATGTTCTACACCAGAGTGTTTGGCAACTCGGAAAGTTTGTATGGATACCCGAATTCTTATCACACAGTGGGGAGTATTAGCCCTAGGTTGAGAAGGCAAGAGATGCAGGCAGATAAATCATTAAACAGAATCTCCATTTTTCTGCTCTGTTGCTTTATTCTGTGTCTTATTGTCTTTTGA 726 0.489 MAFDHNYYSQGFKTLPNSLRDTENYNNSNGCFDCNICLDFANEPVVTLCGHLYCWPCIYKWLHVQSASLAYNEQPLCPVCKAEISHAAMVPLYGRGHSNSNREEKAASCRDICVPPRPPASGPLSLLAMSQNGQQRLPYRNAYRGQHFSLAQEDDNASQMLNLGASISPAFFPRPMVGMFGEMFYTRVFGNSESLYGYPNSYHTVGSISPRLRRQEMQADKSLNRISIFLLCCFILCLIVF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60457g00031 241 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Stsc60457g00031 241 SMART ring_2 34 80 IPR001841 -
Stsc60457g00031 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 94 IPR013083 -
Stsc60457g00031 241 Pfam Zinc finger, C3HC4 type (RING finger) 34 80 IPR018957 GO:0046872
Stsc60457g00031 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 22 238 IPR045103 GO:0005783|GO:0006511|GO:0061630
Stsc60457g00031 241 SUPERFAMILY RING/U-box 30 93 - -
Stsc60457g00031 241 ProSiteProfiles Zinc finger RING-type profile. 34 81 IPR001841 -
Stsc60457g00031 241 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 7 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60457g00031 Stsc-Chr60457 129058 130822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60457g00031 8 227 C3H Transcription Factor Family AT4G27470 39.241 1.51e-42 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60457g00031 K10666 - gmx:100782827 291.967