Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60457g00027 ATGGAAATAATAAGGGATGAAAGAAACACACGATCATCATTATCTTATGATATTGGGTGGTCTTTATCAGATCTCATATTATCATCATCACCTGGCTCAAACACCTTGGACTCAATCTTCTCTCACTGCCCTCCCACTCATTCCACAGTTGATGGCTCCCACTTCCACCAACCTCCAGGGTGGTGCTCCTCCGTATACACCCGCCAGAGAAACATCCTCGAGAAGTTGTACGAGGAAACCCGAATGATGAAGGCTAATAATTATCCATGGAAGAAGAAGAAGCTATACAGGGGAGTGAGACAAAGGAGCAGGGAAAAATGGGTGGCAGAGATTCGACTCCCTCAGAACAGAACTAGGGTTTGGCTTGGCACTTACGATACTCCAGAAGCCGCTGCTTATGCTTATGACCGCGCTGCTTATAAGCTTCGCGGCGAGTATGCACGCTTGAATTTCCCAGCTTTGAAGGAACCCTCATCCTCCATGCTCCTATTATCTTCCCAAGATTCCATGAAGCTTAACTCTTTGGAGTGCTACGTGGATGCTAAGATTCATGGCATATGCCAAAGGCTCAAGAGAGAGAGGAGCATGCGCAATAATAATAATAATAATAACAAGAGTGCTCTCAAGAAGAAGCTTGGTGGGGAGTTTGTTGTTGCAGAAGCTGGTGGCGGTTTGGTTTCAGCAGAGGATGGTGTTTGGCCAACAATGACGACAACAGATATTGAATCATCATCATCATCTTCATTATCATCTGGTGATTTCCAAAATTGTTCCTTAGAAAGACTGCCCTCCTTCGATCCTGACTTGATTTGGGAAGTTCTTGCTAACTAA 831 0.4489 MEIIRDERNTRSSLSYDIGWSLSDLILSSSPGSNTLDSIFSHCPPTHSTVDGSHFHQPPGWCSSVYTRQRNILEKLYEETRMMKANNYPWKKKKLYRGVRQRSREKWVAEIRLPQNRTRVWLGTYDTPEAAAYAYDRAAYKLRGEYARLNFPALKEPSSSMLLLSSQDSMKLNSLECYVDAKIHGICQRLKRERSMRNNNNNNNKSALKKKLGGEFVVAEAGGGLVSAEDGVWPTMTTTDIESSSSSSLSSGDFQNCSLERLPSFDPDLIWEVLAN 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60457g00027 276 Pfam AP2 domain 96 145 IPR001471 GO:0003700|GO:0006355
Stsc60457g00027 276 FunFam Ethylene-responsive transcription factor 2 94 153 - -
Stsc60457g00027 276 SUPERFAMILY DNA-binding domain 95 153 IPR016177 GO:0003677
Stsc60457g00027 276 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700|GO:0006355
Stsc60457g00027 276 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Stsc60457g00027 276 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 40 274 - -
Stsc60457g00027 276 CDD AP2 94 154 IPR001471 GO:0003700|GO:0006355
Stsc60457g00027 276 Gene3D AP2/ERF domain 95 153 IPR036955 GO:0003700|GO:0006355
Stsc60457g00027 276 ProSiteProfiles AP2/ERF domain profile. 95 152 IPR001471 GO:0003700|GO:0006355
Stsc60457g00027 276 SMART rav1_2 95 158 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60457g00027 Stsc-Chr60457 118630 119554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60457g00027 17 276 AP2-EREBP Transcription Factor Family AT1G64380 41.176 6.20e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc60457g00027 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60457g00027 - - adu:107479760 317.39