Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60457g00020 ATGGCCACCGTGCCGCCATGTTTATTATTTCTCTACTTGGTGGTGCTAACAATAACAATAGACATAGCAAGAGCTCAATTCTACTGTGAAAGCACATCATGCGACACGGGTGGAGTTTCAATTGACTTCCCCTTTTACCGCAGAGAAAATCAGATACCTGGATGTGGCTACCCAGGGTTCGAGCTCTCATGCGCCAACAACACCGAGCCGTTACTTAGTCTCCCAGCTGAGCCAGGTGACTTCACCGTGAAACTCATCTCGTTAGAAGACCAACAAGTTTGGATCAACGACCCTCAGCAGTGCCTCCCAAAGCGTATGATGCGTGAGCGGGGCCTCAACCTCCGAGGCTCGCCCTTCCAAATCGCCTCGGATTACTCGCTTGTCAACTACACTTTCTTTAGATGCCCTTCCAATTTAACGGCTCTGTCCATGGTACCCCCAATAACGTGTTTGAACAGTAGAAACTATTCTATGGTTGTGGCGATCTTGTCGGATCCGCCGTTTCCAACGCCGTGGACGACGCCTTGCCACGTCATATCGTGGGCTATGATCCCGGTGGCGGGAGTGCCGTGGCTGTTCTGGACGGATTATGATTCAGACATAAAGTTGGAATGGGATAACCCAAATTGCAGAAGCTGCGAAGCACGTGGAGGTAGGTGTGGGTTCGTTGGCCCAATGCTCCGGGACACTGCTTTTCGTGTTGGTTGTTACGATCTTCCCACTCAACTTCAAGGCCTTTCAAGGAAAACCAAGTACGGTTTAGGTATAGGCCTCGGAATACCGGGAGGCTTTTGTATTATTGTACTTTCATATTTGTTCTACGCCAAGATGAAGACATACGAGCAACAGAGGCTATCAAGAAGTGATTTTTCGACCATAATTTTACCGCGGCTTCCTGTTCAAACCCTGGGGTTGGATGCTGCAAGCATAGAAAAATACCCCAAAACTCTGCTTGGTGAAAGTGGGAGATTGCCTAAGCCTAATGACAATCTTTGTTCCATATGTCTGTGTGAGTACCAGCCCAAGGAGACTTTGAGGACCATACCTGAATGCAATCACTATTTTCATGCCAATTGCATAGATGGATGGCTCAAGATGAATGCTACTTGTCCTCTCTGTCGCAATTTGCCTCAAAGATCTGTTTCATCGACATTAACCTCCTCTATACCTACATCTCCCACTCATTAG 1188 0.479 MATVPPCLLFLYLVVLTITIDIARAQFYCESTSCDTGGVSIDFPFYRRENQIPGCGYPGFELSCANNTEPLLSLPAEPGDFTVKLISLEDQQVWINDPQQCLPKRMMRERGLNLRGSPFQIASDYSLVNYTFFRCPSNLTALSMVPPITCLNSRNYSMVVAILSDPPFPTPWTTPCHVISWAMIPVAGVPWLFWTDYDSDIKLEWDNPNCRSCEARGGRCGFVGPMLRDTAFRVGCYDLPTQLQGLSRKTKYGLGIGLGIPGGFCIIVLSYLFYAKMKTYEQQRLSRSDFSTIILPRLPVQTLGLDAASIEKYPKTLLGESGRLPKPNDNLCSICLCEYQPKETLRTIPECNHYFHANCIDGWLKMNATCPLCRNLPQRSVSSTLTSSIPTSPTH 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60457g00020 395 CDD RING-H2_EL5-like 332 374 - -
Stsc60457g00020 395 Pfam Wall-associated receptor kinase galacturonan-binding 29 97 IPR025287 GO:0030247
Stsc60457g00020 395 SMART ring_2 332 373 IPR001841 -
Stsc60457g00020 395 ProSiteProfiles Zinc finger RING-type profile. 332 374 IPR001841 -
Stsc60457g00020 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 378 IPR013083 -
Stsc60457g00020 395 Pfam Ring finger domain 331 374 IPR001841 -
Stsc60457g00020 395 SUPERFAMILY RING/U-box 327 376 - -
Stsc60457g00020 395 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 377 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60457g00020 Stsc-Chr60457 72473 74517 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60457g00020 29 377 C3H Transcription Factor Family AT2G46495 33.521 9.35e-55 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60457g00020 - - lja:Lj4g3v3004070.1 456.832