Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60457g00019 ATGGCTTCATCGTTACTATTGGCACAGTTGTGTTTACTGGTTTTCTCTGTATTCCATAATCTTGAAATCACAAGAAGCAAACCGGTTTGCGATGTGAAATCATGTGGCGAAATCCAAGATATTCAGTTCCCTTTCGATCTCAAAGAATCCAACCAACACCCTCGCTGCAGCTATTACCCTGACCCCACTTTCCAACTCTCCTGCACCAACCTCACTCAAACAATCCTCACTCTCCCCAAAACAGGGAACTTGCTAATCAAGAACATCGATTACGAGGAACAAACCATCCAAGTCAACGACCCCAAAGGTTGTCTCGCAAACCGATTCTTGCAAAATAACTGGAACCTTTCGGATTCACCATTCAAGCTGGACACAGCACGCTACAGATACTTCAATCTTACCTTCTTGAGTTGCCCCTCAAACTGGACCAAATCCATGGGGATACCTAGAATCGCATGCCTCAGTGACAACAACACGGGAAACTCGGTCATAGTGTCAGGGCTGCGTCCTATTGACACGTCATCAACGTGTGACGTGATATCCACGGCTGTTGTGCCGCTTCCGATCGTGGATATGCCTCAGTGGCCATTCTGGCCTGATCTTAACAACGATATTGGCTTGGCTTGGACACAACCAAGGTGCTGGGAATGTGCGGTCAGTGGCCAAAGTTGTGGCTTCGTCAACGATAAGACTTCTCGAGTTGGATGCTTTTCTACGCCCACCGAAACCCATGGTATTAGTAGCAGTGCAAAATATGGCTTAACCTTAGGAGTGGGAGTACCCGGGCTCCTATGTTTGATTGGGCTTTCGTGCTTCATATGCGGTAAGGTCAAGGTTAATATTCATCGCCGAAGGCCCATCAGAGAGTTCCCAACAACAATTTCGTTACAGCCCATTACTCTTGCAATGGGCCTTGATAAGTCAACAATTGAGAAGTACCCAAAGACTCTTATCGGTGAGAGTGGGCGCTTGTTGAAGCCCAGTGACAATACCTGCTCAATATGCCTCTCTGAATATGAGCCCAAAGATACTTTGAGGACCATACCGGAGTGCAGCCATTATTTCCATGCTGAGTGCATAGATGAGTGGCTCAGAATGAACGGAACGTGCCCCTTATGCAGGAACACCCCGGGGGCAGCATATAGAGTTAACCCTTCTTTCTCTTCTTTGTCTTTTAACACTTCATCAACGTCCTCTACACCATAG 1206 0.471 MASSLLLAQLCLLVFSVFHNLEITRSKPVCDVKSCGEIQDIQFPFDLKESNQHPRCSYYPDPTFQLSCTNLTQTILTLPKTGNLLIKNIDYEEQTIQVNDPKGCLANRFLQNNWNLSDSPFKLDTARYRYFNLTFLSCPSNWTKSMGIPRIACLSDNNTGNSVIVSGLRPIDTSSTCDVISTAVVPLPIVDMPQWPFWPDLNNDIGLAWTQPRCWECAVSGQSCGFVNDKTSRVGCFSTPTETHGISSSAKYGLTLGVGVPGLLCLIGLSCFICGKVKVNIHRRRPIREFPTTISLQPITLAMGLDKSTIEKYPKTLIGESGRLLKPSDNTCSICLSEYEPKDTLRTIPECSHYFHAECIDEWLRMNGTCPLCRNTPGAAYRVNPSFSSLSFNTSSTSSTP 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60457g00019 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 378 IPR013083 -
Stsc60457g00019 401 SUPERFAMILY RING/U-box 324 377 - -
Stsc60457g00019 401 CDD RING-H2_EL5-like 332 374 - -
Stsc60457g00019 401 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 377 IPR046948 -
Stsc60457g00019 401 SMART ring_2 332 373 IPR001841 -
Stsc60457g00019 401 ProSiteProfiles Zinc finger RING-type profile. 332 374 IPR001841 -
Stsc60457g00019 401 Pfam Wall-associated receptor kinase galacturonan-binding 30 100 IPR025287 GO:0030247
Stsc60457g00019 401 Pfam Ring finger domain 330 374 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60457g00019 Stsc-Chr60457 70073 72187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60457g00019 42 378 C3H Transcription Factor Family AT2G25410 36.494 1.45e-53 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60457g00019 - - ahf:112732430 680.633