Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60457g00009 ATGGAAATGGAATTGCAAGCTGAAGCTGATGCTGATTTTGTTACGAATGACATGCTCACACTCCCACACGATCCCTTTGATCCCAACCACATCCTTGATGATGATAATTTGGCTATTGAAGGCGAAAGATGCGGAATATGCATGGATATTGTTATTGATAGGGGCGTTTTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACAATCACTAATCTCTGCCCACTTTGCCAGAACGAGTTTCATTTGATCACTTGTGTACCAGTTTATGATACCATTGGAGGCAATAAAGTTGAAGATGACTCAAGCTTCAGAGATGACGAATGGTCGATTGAAGGGAAGAACAATACATTATCGTTTCCCTCCTACTACATTGATGAAAATGCAGTTACTTGCTTGGATGGTGATGGCTGCAAAGTTCGAAGTGGATTGGCTACTATTGAAGGAGATTCTGATCTTGATACATCAATTGCATGCGATTCATGTGATACATGGTATCATGCCTTCTGTGTGGGATTTGATACGGAAGGTACATCTGAAAGTACATGGTTATGTCCAAGATGTGAGGTTGGAGAAGTTTCTAAAGGAAGAGACTCTGATCCAACGGAGAGCACAAAGATAGAATGTAACCCAGAGCATATTAACAATCAATGTCAGGCTGAAAATTCCTTTTCAAGAAAAGTTTCCGTGTCTGTTGCTGATGCAGGAGAGACAGCTGTTGTTGTTTCAATGGTTGATGGACATAAATGGGTTCCATCAACAAGTGAGAAAGGTCTCTTGCCTCTTGAAATTGGCAGGGATCAATTGACTGAATCATGTATAAAAGAGTCTGACACAACTAATCAGCAGAAAGCAACCGAGAAGGAGATTATGTCACCAATTGTGAAGGAAAAAGAGCTGGAGTTGTGCTTATCACACAATGTATCTGGTAGCCTAAGTTCTAAATCCTTGGAGCATAATGATTTAAGGGAAAGTTCTCATGGAGCAAGTTGTGGACCAAGTAACTTTGATGAAACAAAGTTAGTTGATGAGTCCCGTGTCAAAACTAGTCCATCCAGAAATGAACCTGATATGGGTCTTCATCTTGGTTTGTCAGTGGGCTCTTTCCTATCAGTTGATAATGTGGACAAAAATGAAACAAAAGATCACACAACTGGTGTCAAGCACTTGAGTCCAGATGAAGGTTTTATGGAAGGAGATGTAATTGAAAACAATGATAAGAAGGATAATGGTAGTGTAAATGCTGGGAAGAGAAAGCATGTTGATCACAGCAATGATGAAGTTCATAAGAAAGTTGATGATGGGGATGTGAAGCCTGAATTTCCAATTGAAGTGTCTCGAAAGAAAATTAAAGCTGCTGGTGGTCAAATGAACAGTGCTAATAACTCAGCGGATGCTTTTCTTTCAGACAATGCTCAAAAGGGCCCTGCTTTGAAACATTCTGCATCCAAGGAGGTTGTCAGACCAACTATAATGAATATAGTTAAAGGTACAAACCGAAGGCTTTCCAAGGGACCTGCTGGCACTAATTCATCTGACAATATGTCTAAAAAGGATGAAAATATGGCTGGATTGAGGGTAAAAAAGATAATGAAGAGAGTTTCTGATGATGGAGAATCATCCTTGATAGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATCTTCGATAAACTTTGAGGAAAATATTGATGCAAAGCTTCTCGCAGCATTCAGGGCTGCTATAGCTGGACCTAAAACTGAACCTGTAAATAAGTTAACACCTTCAGCTTTAAAGGCAAAGAAATCAATGTTGCAGAAAGGAACGGTACGTGAGCATCTCACAAAGAAAATTTTTGCTACTTCAAATGGAAAAAGAAAGCGAGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGGTGCATGAGAGCTACAAGGCCTGAAAAAATTGAAACTTTAAAATCAGTTCTAGATCTACTAAGAAAAAGTTCAGAGTCGATGCAGGGTCCTGAATGTCAGGCCAAGGATACTATTCTTTCCAGGTTGTATCTAGCAGATACGTCTGTTTTCCCTCGGAAAGATGATGTCAAGCCCCTCTCTGTACTTAAAACCGATACTAGCTCAGAGCAGACTAAACAAAATAACCCATCAGGAAAAGGATCAAATCTATCTTGTGAAAACAATTCTTGTATAGGAACAGATACAAAAAATCTTTCATGCAATGCCAGAGTTTGTTCATCTGAAACTAAAGTAGATAAGAAGATTGTACATGGCTCAGCTGGTGATAACTCAGCTTCTCGTAAGACACCAGTTACTTCTTCAGCTGGTGCCAAAGCTAATGCAAAGGAATTAGGCCTTAAATCAGATTCTATGAAGAGTGATAAAAAGAAATGGGCTTTAGAGTTTCTTGCCAAGAAAACAGCTGCTGAAAGCAAAAAGACGGCAAATGGAAGTCAGGAAGACAATGCAATTTTTAAAGATAAATTTCCTTTGCTTGCCCAACTACCTGCTGATATGAGACCAGTACTGGGACCTTCTTGTCATAATAAAATCCCAGTATCAGTGAGGCAGACACAGCTTTACCGTCTAACAGAGCGCTTGTTGAGGAACGCAAATCTGCCAGTCATTCGCAGAACTGCAGATACAGAATTGGCTGTTGCAGATGCAATCAATATTGAAAAGGAGGTTGCTGACAGATCAAGCAGCAAGCTTGTGTATCTGAATCTCTGTGCACAAGAGCTCCGTCATCGCGCAAATAACGCAAAATCCAATGTAGCTGAAGATACAGATTCCCCAGGCCCTTCTGCCAAGGTTTCTGATCAATCAGAACAAAATGCTGATGATTGTTCGATTGACCCTGCTGTTGAAGCCTTGAAAAATGCTGGTCTATTGTCTGATTCACCGCCTAGCAGTCCACATGAGATCAGAGAAACAGGTAATGAAAATGATACTTCAGGGCCTGATAATATACTTGAATTGGATTCTCATCCTGAGCTGGACATTTATGGCGATTTTGAGTATGATTTGGAAGATGAAGATTACATTGGGGTTTCAAAGGTCTTAAACCCAAAGCCAGAGGAAAATGAGTCGAAAGTGAAACTTGTTTTCTCCACCATGAACTTGAAAAAGTCAGATACTGCTTTGGATGAGTCAGACTGTAAAGGGTCCCGTAAAAGTGACGTGTTACGAGATGCCTCAGGCTCAACAGAGTTTAAGATCGAAGCAGTCGCAGTCCCTACGGACTCAGCAACGGATGCAGAGATTGGCCGGCCTTCTGTTTCTGTTTCTTCTGAGTTATGTGAAAGTGCTGTTGAGCCAGCTGATTCAGAATTTGAAGAATTGTATGGCCCTGACAAAGAACCACTCATAAAAAAATTTCCAGATGCTGAACCAAGAACAACATTTGAAGAGGGCAAGAAAGAAACACCAAGTGAAGCCACTGACAAATCTGAGTGTGATTCTGTAAAGCATGTAACAAAGAAGGTAGAAGCCTATATCAAGGAGCATATGAGGCCACTGTGCAAGAGTGGTGTGATCACAGCAGAACAGTACAGGTGGGCAGTTGCAAAAACAACAGAGAAGGTTATGAAGTATCATTGCAAAGCAAAGAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAGTAAAGAAGCTTGCAGAGCAGTATGCCGAAGCAGCCCAACAGAACAGAAAAAATTGA 3711 0.4064 MEMELQAEADADFVTNDMLTLPHDPFDPNHILDDDNLAIEGERCGICMDIVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFHLITCVPVYDTIGGNKVEDDSSFRDDEWSIEGKNNTLSFPSYYIDENAVTCLDGDGCKVRSGLATIEGDSDLDTSIACDSCDTWYHAFCVGFDTEGTSESTWLCPRCEVGEVSKGRDSDPTESTKIECNPEHINNQCQAENSFSRKVSVSVADAGETAVVVSMVDGHKWVPSTSEKGLLPLEIGRDQLTESCIKESDTTNQQKATEKEIMSPIVKEKELELCLSHNVSGSLSSKSLEHNDLRESSHGASCGPSNFDETKLVDESRVKTSPSRNEPDMGLHLGLSVGSFLSVDNVDKNETKDHTTGVKHLSPDEGFMEGDVIENNDKKDNGSVNAGKRKHVDHSNDEVHKKVDDGDVKPEFPIEVSRKKIKAAGGQMNSANNSADAFLSDNAQKGPALKHSASKEVVRPTIMNIVKGTNRRLSKGPAGTNSSDNMSKKDENMAGLRVKKIMKRVSDDGESSLIVQNLRKEIREAVRNKSSINFEENIDAKLLAAFRAAIAGPKTEPVNKLTPSALKAKKSMLQKGTVREHLTKKIFATSNGKRKRAWDRDCEIEFWKYRCMRATRPEKIETLKSVLDLLRKSSESMQGPECQAKDTILSRLYLADTSVFPRKDDVKPLSVLKTDTSSEQTKQNNPSGKGSNLSCENNSCIGTDTKNLSCNARVCSSETKVDKKIVHGSAGDNSASRKTPVTSSAGAKANAKELGLKSDSMKSDKKKWALEFLAKKTAAESKKTANGSQEDNAIFKDKFPLLAQLPADMRPVLGPSCHNKIPVSVRQTQLYRLTERLLRNANLPVIRRTADTELAVADAINIEKEVADRSSSKLVYLNLCAQELRHRANNAKSNVAEDTDSPGPSAKVSDQSEQNADDCSIDPAVEALKNAGLLSDSPPSSPHEIRETGNENDTSGPDNILELDSHPELDIYGDFEYDLEDEDYIGVSKVLNPKPEENESKVKLVFSTMNLKKSDTALDESDCKGSRKSDVLRDASGSTEFKIEAVAVPTDSATDAEIGRPSVSVSSELCESAVEPADSEFEELYGPDKEPLIKKFPDAEPRTTFEEGKKETPSEATDKSECDSVKHVTKKVEAYIKEHMRPLCKSGVITAEQYRWAVAKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYAEAAQQNRKN 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60457g00009 1236 MobiDBLite consensus disorder prediction 316 365 - -
Stsc60457g00009 1236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 124 IPR013083 -
Stsc60457g00009 1236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 199 IPR013083 -
Stsc60457g00009 1236 SMART ring_2 44 82 IPR001841 -
Stsc60457g00009 1236 Pfam Zinc finger, C3HC4 type (RING finger) 44 82 IPR018957 GO:0046872
Stsc60457g00009 1236 Coils Coil 549 569 - -
Stsc60457g00009 1236 MobiDBLite consensus disorder prediction 705 728 - -
Stsc60457g00009 1236 MobiDBLite consensus disorder prediction 766 780 - -
Stsc60457g00009 1236 ProSitePatterns Zinc finger RING-type signature. 60 69 IPR017907 -
Stsc60457g00009 1236 Pfam PHD-finger 157 194 IPR019787 -
Stsc60457g00009 1236 MobiDBLite consensus disorder prediction 928 951 - -
Stsc60457g00009 1236 MobiDBLite consensus disorder prediction 1132 1155 - -
Stsc60457g00009 1236 MobiDBLite consensus disorder prediction 966 998 - -
Stsc60457g00009 1236 MobiDBLite consensus disorder prediction 385 443 - -
Stsc60457g00009 1236 SUPERFAMILY FYVE/PHD zinc finger 157 196 IPR011011 -
Stsc60457g00009 1236 MobiDBLite consensus disorder prediction 761 781 - -
Stsc60457g00009 1236 SMART PHD_3 142 194 IPR001965 -
Stsc60457g00009 1236 PANTHER RING FINGER PROTEIN 41, 151 125 1226 - -
Stsc60457g00009 1236 MobiDBLite consensus disorder prediction 924 951 - -
Stsc60457g00009 1236 Coils Coil 1219 1236 - -
Stsc60457g00009 1236 ProSiteProfiles Zinc finger PHD-type profile. 76 196 IPR019787 -
Stsc60457g00009 1236 ProSiteProfiles Zinc finger RING-type profile. 44 83 IPR001841 -
Stsc60457g00009 1236 SUPERFAMILY RING/U-box 34 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60457g00009 Stsc-Chr60457 25859 32857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60457g00009 44 130 C3H Transcription Factor Family AT3G58030 31.579 5.32e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc60457g00009 PHD 8.8e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60457g00009 - - adu:107479708 2153.64