Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60457g00004 ATGGAGGACGCTGAGACAAGAGAGAGAATTGAGGAAACGGTGCGGACCATTCTGGAAGGATCCAACATGGATGAAATCACTGAGTCCAAGATTCGAAAGCAGGCTTCCACCCACCTCGGCATCGACCTCTCTCAGCCCCCATTCAAAGCCTTCGTCAAGCAGGTCGTTCAAGCTTTCCTCGATGAGAAGCAGAACCAACCTGAAGAACAACCACAACAAGAGTATGATGACGACGGCGATCTCATTATCTGCAAGCTCTCTGACCGGAGAAGGGTCACCATTCAGGACTTCCGTGGCAAAACTTTGGTATCCATTCGCGAGTATTACCGAAAGGACGGCAAGGAACTTCCTTCCTCTAAAGGAATAAGTTTGACAGAGGAGCAATGGTCTGCCTTCAAGAAAAATGTGCCTGCTATAGAAAAGGCCATTAAGAAGATGGAGTCCCGCAACATATAA 456 0.4825 MEDAETRERIEETVRTILEGSNMDEITESKIRKQASTHLGIDLSQPPFKAFVKQVVQAFLDEKQNQPEEQPQQEYDDDGDLIICKLSDRRRVTIQDFRGKTLVSIREYYRKDGKELPSSKGISLTEEQWSAFKKNVPAIEKAIKKMESRNI 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60457g00004 151 SUPERFAMILY DEK C-terminal domain 4 61 - -
Stsc60457g00004 151 Pfam Transcriptional Coactivator p15 (PC4) 84 135 IPR003173 GO:0003677|GO:0006355
Stsc60457g00004 151 PIRSF RNA_polymII_KELP 1 150 IPR017415 -
Stsc60457g00004 151 Gene3D - 2 63 - -
Stsc60457g00004 151 FunFam RNA polymerase II transcriptional coactivator KELP 73 149 - -
Stsc60457g00004 151 Gene3D Transcriptional Coactivator Pc4; Chain A 73 149 IPR009044 GO:0003677|GO:0006355
Stsc60457g00004 151 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 4 61 IPR014876 -
Stsc60457g00004 151 Pfam DEK C terminal domain 5 60 IPR014876 -
Stsc60457g00004 151 SUPERFAMILY ssDNA-binding transcriptional regulator domain 83 146 IPR009044 GO:0003677|GO:0006355
Stsc60457g00004 151 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 4 149 IPR045125 GO:0003713|GO:0060261
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60457g00004 Stsc-Chr60457 11277 12572 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Stsc60457g00004 DEK_C 1.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60457g00004 K25815 - gmx:100499671 222.246