Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60456g00020 ATGGGACTTCAACTCAAGAAACCAGTCATATACACTAGTATTGTAACACTATCACTTACCTCAATTACAAAACTCTTGTGCCATCAACTTTCTACACCTTTCCCTTCCTCAAATTTCATTGCTGCTGTTGCCACCCTTCTCTTTACCTTATTCATATACTTGTTCTCCTGGAAAAGGAACTCTTGTAACACTACTACTCTCCCACCAGGGCCTCTCTCTGTCCCTATATTTGGAAACTGGTTACAAGTTGGCAATGATCTCAACCATCGTCTTCTAGCTTCATACTCACAAGCCTATGGCCCAGTTTTCCTTCTCAAACTTGGCTCCAAGAACTTGGTTGTGGTCTCTGATCCAGAGCTTGCCACCCAAGTCCTCCATTCACAAGGTGTCGAATTCGGGTCTCGCCCTCGAAACGTTGTGTTTGATATCTTCACCGGAAATGGACAAGACATGGTGTTCACTGTCTATGGTGATCATTGGCGCAAGATGCGGAGGATAATGACGCTGCCATTTTTCACCAACAAAGTTGTCCAGAACTACAGCAACATGTGGGAGGAAGAGATGAATTTGGTGGTGTGTGATCTCAATGGCAATGCTGAGAAAGTGAGTAGGGAAGGGATAGTTATCAGAAGGAGGCTTCAGCTGATGCTGTATAACATCATGTATAGGATGATGTTTGATGCAAAGTTTGAGTCTCAGGAGGATCCTTTGTTCATTCAAGCTACCAAGTTTAACTCTGAGAGAAGCCGTTTGGCTCAGAGCTTTGAGTACAATTATGGAGATTTTATACCTCTTCTTAGACCATTCTTGAGGGGCTACCTCAACAAGTGCAAGGACTTGCAGACTAGGAGATTGGCATTTTTCAACAACTACTACATCGAGAAAAGGAGAAACATAATGGCTGCTAATGGAGAAAAGCACAAGATAAGCTGTGCAATTGATCACATCATAGATGCACAGATGAAGGGAGAAATAAGTGAAGAGAATGTGCTTTACATTGTAGAGAACATAAATGTTGCAGCAATAGAGACAACACTGTGGTCAATGGAGTGGGCAATAGCAGAGTTGGTCAACCATCCACATGTCCAAACAAAGATTCGTGATGAGATATCCAAAGTGCTTAAAGACCAGACAGTTACAGAATCTAACCTCCATCAACTTCCATATCTACAAGCCACAGTGAAAGAGACACTAAGACTTCACACCCCAATTCCTCTACTTGTCCCACACATGAACCTTGAGGAAGCAAATCTAGGAGGGTACAAGATCCCAAAGGAGTCAAAAGTGGTGGTGAATGCATGGTGGCTTGCAAATAACCCTGCATGGTGGAAGAACCCTCAAGAGTTTAGGCCAGAGAGGTTCTTGGAAGAGGAGAATGAGACAGAAGCAGTGGCTGGAGGGAAGGTTGATTTCAGGTTCTTGCCATTTGGTGTTGGAAGGAGGAGTTGCCCTGGGATCATTCTTGCATTGCCAATTCTGGGTTTGGTCATTGCAAAGTTGGTAACAAACTTTGACATGAAAGCTCCAAATGGAACAAACAAGATTGATGTCTCTGAAAAAGGTGGTCAATTCAGCTTGCACATTGCTAACCATTCCACTGTTCGTTTTGATCCAATTAAGTAG 1623 0.4319 MGLQLKKPVIYTSIVTLSLTSITKLLCHQLSTPFPSSNFIAAVATLLFTLFIYLFSWKRNSCNTTTLPPGPLSVPIFGNWLQVGNDLNHRLLASYSQAYGPVFLLKLGSKNLVVVSDPELATQVLHSQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVQNYSNMWEEEMNLVVCDLNGNAEKVSREGIVIRRRLQLMLYNIMYRMMFDAKFESQEDPLFIQATKFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCKDLQTRRLAFFNNYYIEKRRNIMAANGEKHKISCAIDHIIDAQMKGEISEENVLYIVENINVAAIETTLWSMEWAIAELVNHPHVQTKIRDEISKVLKDQTVTESNLHQLPYLQATVKETLRLHTPIPLLVPHMNLEEANLGGYKIPKESKVVVNAWWLANNPAWWKNPQEFRPERFLEEENETEAVAGGKVDFRFLPFGVGRRSCPGIILALPILGLVIAKLVTNFDMKAPNGTNKIDVSEKGGQFSLHIANHSTVRFDPIK 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60456g00020 540 PRINTS P450 superfamily signature 392 403 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60456g00020 540 PRINTS P450 superfamily signature 474 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60456g00020 540 PRINTS P450 superfamily signature 340 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60456g00020 540 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 476 485 IPR017972 GO:0005506|GO:0016705
Stsc60456g00020 540 Gene3D Cytochrome P450 57 534 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60456g00020 540 FunFam Trans-cinnamate 4-monooxygenase 58 533 - -
Stsc60456g00020 540 PRINTS E-class P450 group I signature 473 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60456g00020 540 PRINTS E-class P450 group I signature 391 409 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60456g00020 540 PRINTS E-class P450 group I signature 120 141 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60456g00020 540 PRINTS E-class P450 group I signature 216 234 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60456g00020 540 PRINTS E-class P450 group I signature 349 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60456g00020 540 PRINTS E-class P450 group I signature 96 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60456g00020 540 PRINTS E-class P450 group I signature 329 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60456g00020 540 PRINTS E-class P450 group I signature 483 506 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60456g00020 540 PRINTS E-class P450 group I signature 432 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60456g00020 540 Pfam Cytochrome P450 68 529 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60456g00020 540 SUPERFAMILY Cytochrome P450 68 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60456g00020 540 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 45 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60456g00020 Stsc-Chr60456 148861 151097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60456g00020 77 538 Monolignol Biosynthesis Gene Families AT2G30490 64.655 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60456g00020 K00487 - gmx:100812188 894.804