LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60456g00017	ATGTGTGCCCCTTCTGAGTCGAAGTCTCACGGGAGCTCTGGTCTGTCTGACAATAGCCAAGGAAACTCCGATCCAGCTGCTGAGAGTAGACCTAAGAAGAGACGGCGCCTGACAAAAGTTGGTAGCAAAGAAGTGGCTAATTTGGCTGCTATTAAACTAGATATGAGTAATACTAGACCCAATACCAAAATTGGAACTGGAAAGACCCCGGTGAAGAATGTTTCTGATAACTATTTAGTTGTAGGTTCCCAAGTTGAGGTTCTCTCACAGGACAGTGGAATCAGAGGCTGTTGGTTCAGAGCCTCTATCGTTAAGATGCACAAAAATAAAGTGAAGGTTCAATATCAAGACATTCAGGATGCAGCTGATGAAACTAAGAAGCTTGAGGAATGGGTTTTGGCTTCCAGAATCTTAGCTCATGATGATCTGAGGCTAAGGAAGTACGGAAGGAATAAGATTCGACCAGTCCCACCACCTCATAGATTTGAAAAATCTGTGGGGGTTGATGTTGGTTCTATCGTTGACGCTTGGTGGCATGATGGTTGGTGGGAAGGCATTGTTGTTGAAATCGTGTCTGAAGCTAAATATCGTGTTTATTTCCCAGGGGAAAAGACGGTGTCGATGTTTGACCTTGTTAACTTACGGCAATCTCAGGAATGGATAGGGAATGAATGGATGAAGATGAGGGGAAGGCCTGACCTTGTTGATTCTGTTTTGTCAACCTTAAAGGCTAAACAAGGTCCCTGCAAATCAAGTGAATTATCCACAGGAGATGTCATACAATCAAAGGAGGCTGATGCTGCATGTTTGGATTCTGAAAGGGATCAAAATAGGAAGCCTGAGTTGTTTCCAGACCTCTTGAAAGATGATACACTATCTCAATTACGGTGGTCATCTAGGAAGAGGAGACGCAGTGATAAAGATAGGAGGAAGTCCCCAAACTCTGTGGAATCTGATGATGCTTCTGACAGTTTTGTGATTCCAGCGTTTGTGAATGTTGAACATGATGACTTCAAGTATGGAGGGGATCCTTCTGTTTTCAACTCTTCGGTTGTCCCTTCTTTAACTAACTTAGTTATGTGTAGGTAA	1089	0.4325	MCAPSESKSHGSSGLSDNSQGNSDPAAESRPKKRRRLTKVGSKEVANLAAIKLDMSNTRPNTKIGTGKTPVKNVSDNYLVVGSQVEVLSQDSGIRGCWFRASIVKMHKNKVKVQYQDIQDAADETKKLEEWVLASRILAHDDLRLRKYGRNKIRPVPPPHRFEKSVGVDVGSIVDAWWHDGWWEGIVVEIVSEAKYRVYFPGEKTVSMFDLVNLRQSQEWIGNEWMKMRGRPDLVDSVLSTLKAKQGPCKSSELSTGDVIQSKEADAACLDSERDQNRKPELFPDLLKDDTLSQLRWSSRKRRRSDKDRRKSPNSVESDDASDSFVIPAFVNVEHDDFKYGGDPSVFNSSVVPSLTNLVMCR	362

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc60456g00017	362	Pfam	Agenet domain	82	158	IPR008395	-
	Stsc60456g00017	362	SMART	agenet_At_2	77	145	IPR014002	-
	Stsc60456g00017	362	SMART	agenet_At_2	166	222	IPR014002	-
	Stsc60456g00017	362	MobiDBLite	consensus disorder prediction	1	26	-	-
	Stsc60456g00017	362	Gene3D	-	68	146	-	-
	Stsc60456g00017	362	MobiDBLite	consensus disorder prediction	298	321	-	-
	Stsc60456g00017	362	PANTHER	AGENET DOMAIN-CONTAINING PROTEIN-RELATED	58	311	-	-
	Stsc60456g00017	362	MobiDBLite	consensus disorder prediction	1	41	-	-
	Stsc60456g00017	362	CDD	Tudor_Agenet_AtDUF_rpt1_3	79	158	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60456g00017	Stsc-Chr60456	128560	130644	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60456g00017	89	220	PHD Transcription Factor Family	AT5G58610	28.889	3.61e-07	50.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60456g00017	-		-	gsj:114422899	368.237

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