Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60456g00017 ATGTGTGCCCCTTCTGAGTCGAAGTCTCACGGGAGCTCTGGTCTGTCTGACAATAGCCAAGGAAACTCCGATCCAGCTGCTGAGAGTAGACCTAAGAAGAGACGGCGCCTGACAAAAGTTGGTAGCAAAGAAGTGGCTAATTTGGCTGCTATTAAACTAGATATGAGTAATACTAGACCCAATACCAAAATTGGAACTGGAAAGACCCCGGTGAAGAATGTTTCTGATAACTATTTAGTTGTAGGTTCCCAAGTTGAGGTTCTCTCACAGGACAGTGGAATCAGAGGCTGTTGGTTCAGAGCCTCTATCGTTAAGATGCACAAAAATAAAGTGAAGGTTCAATATCAAGACATTCAGGATGCAGCTGATGAAACTAAGAAGCTTGAGGAATGGGTTTTGGCTTCCAGAATCTTAGCTCATGATGATCTGAGGCTAAGGAAGTACGGAAGGAATAAGATTCGACCAGTCCCACCACCTCATAGATTTGAAAAATCTGTGGGGGTTGATGTTGGTTCTATCGTTGACGCTTGGTGGCATGATGGTTGGTGGGAAGGCATTGTTGTTGAAATCGTGTCTGAAGCTAAATATCGTGTTTATTTCCCAGGGGAAAAGACGGTGTCGATGTTTGACCTTGTTAACTTACGGCAATCTCAGGAATGGATAGGGAATGAATGGATGAAGATGAGGGGAAGGCCTGACCTTGTTGATTCTGTTTTGTCAACCTTAAAGGCTAAACAAGGTCCCTGCAAATCAAGTGAATTATCCACAGGAGATGTCATACAATCAAAGGAGGCTGATGCTGCATGTTTGGATTCTGAAAGGGATCAAAATAGGAAGCCTGAGTTGTTTCCAGACCTCTTGAAAGATGATACACTATCTCAATTACGGTGGTCATCTAGGAAGAGGAGACGCAGTGATAAAGATAGGAGGAAGTCCCCAAACTCTGTGGAATCTGATGATGCTTCTGACAGTTTTGTGATTCCAGCGTTTGTGAATGTTGAACATGATGACTTCAAGTATGGAGGGGATCCTTCTGTTTTCAACTCTTCGGTTGTCCCTTCTTTAACTAACTTAGTTATGTGTAGGTAA 1089 0.4325 MCAPSESKSHGSSGLSDNSQGNSDPAAESRPKKRRRLTKVGSKEVANLAAIKLDMSNTRPNTKIGTGKTPVKNVSDNYLVVGSQVEVLSQDSGIRGCWFRASIVKMHKNKVKVQYQDIQDAADETKKLEEWVLASRILAHDDLRLRKYGRNKIRPVPPPHRFEKSVGVDVGSIVDAWWHDGWWEGIVVEIVSEAKYRVYFPGEKTVSMFDLVNLRQSQEWIGNEWMKMRGRPDLVDSVLSTLKAKQGPCKSSELSTGDVIQSKEADAACLDSERDQNRKPELFPDLLKDDTLSQLRWSSRKRRRSDKDRRKSPNSVESDDASDSFVIPAFVNVEHDDFKYGGDPSVFNSSVVPSLTNLVMCR 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60456g00017 362 Pfam Agenet domain 82 158 IPR008395 -
Stsc60456g00017 362 SMART agenet_At_2 77 145 IPR014002 -
Stsc60456g00017 362 SMART agenet_At_2 166 222 IPR014002 -
Stsc60456g00017 362 MobiDBLite consensus disorder prediction 1 26 - -
Stsc60456g00017 362 Gene3D - 68 146 - -
Stsc60456g00017 362 MobiDBLite consensus disorder prediction 298 321 - -
Stsc60456g00017 362 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 58 311 - -
Stsc60456g00017 362 MobiDBLite consensus disorder prediction 1 41 - -
Stsc60456g00017 362 CDD Tudor_Agenet_AtDUF_rpt1_3 79 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60456g00017 Stsc-Chr60456 128560 130644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60456g00017 89 220 PHD Transcription Factor Family AT5G58610 28.889 3.61e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60456g00017 - - gsj:114422899 368.237