Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60456g00011 ATGAAGGTTTTTGTAAAGACTCTGAAGGGAACTCACTTCGAAATTGAAGTGAAGCCCGATGACACGGTTACTGAAGTGAAGAAAAATATAGAAACTGTTCAAGGAGCAAATGTCTACCCTGCTGCGCAGCAAATGCTTATTCATCAAGGCAAGGTTCTCAAGGATGGTACTACTTTGGAGGAAAACAAAGTCGCTGAAAATAGTTTCATTGTAATCATGCTTTCTAAGAGTAAAAGCACATCTGGTGAAGGATCTACTGCATCAACAGCCCCTGCATCAAAGGCTCCACAGACTAGTGCTACTCCTACCCCTACCCCTACCCCATCTGTGTCAGTAGCACCTCAAGCTGCTCCTGCCACTGCTACACCACCTGCATCTGTGGCTTCGCCTTCTCCTGCACCTGCACCTTCACCTTCACCTACTGCAGCTCCTACATCTACAGACACTGCCGTGGCAGGGTCTGATATCTATGGTCAGGCAGCATCAAATCTGGTTGCTGGAAGCAACTTGGAGGGAACAGTTCAGCAGATTCTTGATATGGGAGGTGGGAGCTGGGATAGGGAAACAGTTATCCGTGCTCTTAGAGCTGCTTACAACAACCCTGAGAGAGCAGTTGAATATTTGTATACGGGTATCCCTGAGCAAGCTGAAGCTCCACCTGTGGCCCGAGTGCCTACAAGTGTACAACCTGCAAATTCTCCTGCTGCTGCACCTCAAGCTGCGCAACCAGCTCCTGTTACAACTAGTGGCCCAAATGCTAATCCTTTAGACCTATTTCCGCAGGGCCTCCCCAATGTTGGTTCTGGTGCCGCTGGTGCTGGCTCTTTAGAATTTCTACGCAACAGTCAACAGTTTCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAGATATTGCAGCCTATGCTACAAGAACTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCATCAAGCTGATTTCCTTCGTCTGATAAATGAACCTGTGGAAGGTGGTGAGGGGAATTTATTTGGGCAGCTAGCTGCTGGTATGCCACAATCAGTAACCGTCACACCTGAAGAGCGCCAAGCGATCGAGCGGCTTGAAGCAATGGGCTTTGATCGGGCACTTGTGTTGGAGGTGTACTTTGCATGCAACAAGAACGAGGAATTGGCTGCCAACTACCTCTTAGATCATATGCATGAGTTTGACGAACAATAG 1209 0.4797 MKVFVKTLKGTHFEIEVKPDDTVTEVKKNIETVQGANVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKSKSTSGEGSTASTAPASKAPQTSATPTPTPTPSVSVAPQAAPATATPPASVASPSPAPAPSPSPTAAPTSTDTAVAGSDIYGQAASNLVAGSNLEGTVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYTGIPEQAEAPPVARVPTSVQPANSPAAAPQAAQPAPVTTSGPNANPLDLFPQGLPNVGSGAAGAGSLEFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNLFGQLAAGMPQSVTVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFDEQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60456g00011 402 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Stsc60456g00011 402 SMART uba_6 170 210 IPR015940 -
Stsc60456g00011 402 SMART uba_6 357 394 IPR015940 -
Stsc60456g00011 402 MobiDBLite consensus disorder prediction 226 252 - -
Stsc60456g00011 402 SUPERFAMILY UBA-like 167 219 IPR009060 GO:0005515
Stsc60456g00011 402 SMART CBM 274 317 IPR006636 -
Stsc60456g00011 402 FunFam UV excision repair protein RAD23 1 80 - -
Stsc60456g00011 402 Pfam UBA/TS-N domain 173 208 IPR015940 -
Stsc60456g00011 402 Pfam UBA/TS-N domain 357 392 IPR015940 -
Stsc60456g00011 402 SUPERFAMILY UBA-like 336 400 IPR009060 GO:0005515
Stsc60456g00011 402 SUPERFAMILY XPC-binding domain 273 338 IPR036353 GO:0003684|GO:0006289|GO:0043161
Stsc60456g00011 402 MobiDBLite consensus disorder prediction 125 141 - -
Stsc60456g00011 402 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 354 395 IPR015940 -
Stsc60456g00011 402 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 168 211 IPR015940 -
Stsc60456g00011 402 MobiDBLite consensus disorder prediction 79 100 - -
Stsc60456g00011 402 FunFam UV excision repair protein RAD23 homolog 163 213 - -
Stsc60456g00011 402 Gene3D - 349 396 - -
Stsc60456g00011 402 CDD Ubl_Rad23 1 74 - -
Stsc60456g00011 402 CDD UBA1_Rad23_plant 164 213 - -
Stsc60456g00011 402 MobiDBLite consensus disorder prediction 79 149 - -
Stsc60456g00011 402 NCBIfam UV excision repair protein Rad23 1 400 IPR004806 GO:0006289
Stsc60456g00011 402 FunFam UV excision repair protein RAD23 B 267 332 - -
Stsc60456g00011 402 Gene3D - 1 80 - -
Stsc60456g00011 402 PRINTS DNA repair protein Rad23 signature 351 367 IPR004806 GO:0006289
Stsc60456g00011 402 PRINTS DNA repair protein Rad23 signature 383 398 IPR004806 GO:0006289
Stsc60456g00011 402 PRINTS DNA repair protein Rad23 signature 368 382 IPR004806 GO:0006289
Stsc60456g00011 402 PRINTS DNA repair protein Rad23 signature 302 324 IPR004806 GO:0006289
Stsc60456g00011 402 SMART ubq_7 1 75 IPR000626 GO:0005515
Stsc60456g00011 402 MobiDBLite consensus disorder prediction 224 252 - -
Stsc60456g00011 402 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 390 - -
Stsc60456g00011 402 Gene3D - 267 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
Stsc60456g00011 402 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Stsc60456g00011 402 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Stsc60456g00011 402 Pfam XPC-binding domain 276 331 IPR015360 GO:0003684|GO:0006289|GO:0043161
Stsc60456g00011 402 Gene3D - 163 213 - -
Stsc60456g00011 402 FunFam UV excision repair protein RAD23 homolog 348 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60456g00011 Stsc-Chr60456 107209 111407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60456g00011 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 3.42e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60456g00011 K10839 - gmx:100814162 581.637