Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60456g00004 ATGGCGGAGCCTCGGAAACAACCGGCTAACAGAACAACAAAGCAAAGGACTCAAGATTCCTCCAAGACGATGGCCAGAAAACTCCGCATAATCTACGCGGATCCCGAAGCAACAGACTCATCCGACGATGAATCGAACCAAAAGAGAATCAAGAGAAGAATCCATGAGATTCCTCTCCCTCTTGTTCTCTCCGGCGTCTCCACTCCCACCTCCTCCTCCGAGGTCAATGCAAAGACTCACATCAAGAGGAGGGTTTCGCCGTCGAGCGGAAGCAGGAGGCAAACCTCCGGGAAGTACAGAGGAGTTAGGCAGAGGAAGTGGGGTAAATGGGCTGCTGAGATTCGTGACCCTTTCAAGAGCGCACGCATCTGGTTGGGTACTTACAACACTGCTGAAGAAGCTTCTCAGGCCTATGAAGCTAAACGGCTCGAGTTTGAAGCCATGGCTAGGTCCATGTCTCACTCTAACTCTCAGAGCAACTGCTGCAACTCATCTCCTGCTCCTGCCGGAGTTTGTGTTTCCGACAACAAGTCCTCTACATCGGAGGATTCCGAGAGCGTCTTCTCTTACACATCACCATCCTCCGTTCTTGAGTTGGATTCTTCAGCTTCTCATTCCAACCACACCGTTGATGCTAATGCCAATGCTAATGAAGATGTTGTTGAGAATGAGACCAATGACTTGGTGGCTGAGTTGGCTTCCTTGGAGATACCTGATTTGAGCATGCTGAACCTCCCTCCGCCACCGGAGCCACCGTCTTCTGCGGCTGTCACTGTTGATGCTTGTGGTTCTGTGCCTGAGATGAGTCTTGGACTGGATTTTGACTGGCTGAGTTTTGATGATTATGGACATGGGTTTGATGATCTTGGTGGGTTTGAGGATTTACAAATCTGCTTGGATGAGAATGGGCCAAGCCAACTTCCTGATTTCGATTTTGATGATTTTGGTGGTGACGAGTTTGCTGGTTGGATTGAGGAGCCCCTCAATATACCCTGCGCATAA 1002 0.499 MAEPRKQPANRTTKQRTQDSSKTMARKLRIIYADPEATDSSDDESNQKRIKRRIHEIPLPLVLSGVSTPTSSSEVNAKTHIKRRVSPSSGSRRQTSGKYRGVRQRKWGKWAAEIRDPFKSARIWLGTYNTAEEASQAYEAKRLEFEAMARSMSHSNSQSNCCNSSPAPAGVCVSDNKSSTSEDSESVFSYTSPSSVLELDSSASHSNHTVDANANANEDVVENETNDLVAELASLEIPDLSMLNLPPPPEPPSSAAVTVDACGSVPEMSLGLDFDWLSFDDYGHGFDDLGGFEDLQICLDENGPSQLPDFDFDDFGGDEFAGWIEEPLNIPCA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60456g00004 333 MobiDBLite consensus disorder prediction 1 101 - -
Stsc60456g00004 333 SMART rav1_2 98 159 IPR001471 GO:0003700|GO:0006355
Stsc60456g00004 333 PIRSF PTI6 254 321 IPR017392 GO:0003700
Stsc60456g00004 333 PIRSF PTI6 6 242 IPR017392 GO:0003700
Stsc60456g00004 333 MobiDBLite consensus disorder prediction 64 97 - -
Stsc60456g00004 333 Pfam AP2 domain 98 147 IPR001471 GO:0003700|GO:0006355
Stsc60456g00004 333 SUPERFAMILY DNA-binding domain 98 145 IPR016177 GO:0003677
Stsc60456g00004 333 MobiDBLite consensus disorder prediction 41 56 - -
Stsc60456g00004 333 ProSiteProfiles AP2/ERF domain profile. 98 158 IPR001471 GO:0003700|GO:0006355
Stsc60456g00004 333 CDD AP2 98 145 IPR001471 GO:0003700|GO:0006355
Stsc60456g00004 333 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Stsc60456g00004 333 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Stsc60456g00004 333 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 218 - -
Stsc60456g00004 333 Gene3D AP2/ERF domain 97 154 IPR036955 GO:0003700|GO:0006355
Stsc60456g00004 333 MobiDBLite consensus disorder prediction 154 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60456g00004 Stsc-Chr60456 59727 60728 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60456g00004 26 332 AP2-EREBP Transcription Factor Family AT1G68550 36.254 3.79e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc60456g00004 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60456g00004 - - gmx:100306276 319.701