Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60454g00012 ATGGCTACTAGAGTTCTTTCCTCTCTTCGTTCTGCCTCTTTATCTTCTGCTTCACCATCTATTGGCCTATATTGTCGATGGGTTAGAAGTATCAGCGGAATTAGTGCTTCATCTGCTGCTGAAACTGAACCTGTGACCCCACCAGTGCAAATTGATCATACTCAGCTTTTAATTGATGGAAATTTTGTGGATGCAGCTTCTGGAAAAACTTTTCCAACCTTTGATCCAAGAACAGGTGAAGTAATTGCAAATGTTGCTGAAGCTGACAGTGAAGATGTTAACCGTGCAGTCTCTGCTGCACGCCAAGCCTTCGATGAAGGGCCATGGCCAAAGATGACAGCTTATGAAAGGTCACGAATACTATTTCGATTCGCTGATTTATTGGAGAAGCACAATGATGAAGTTGCAGCAATTGAAACATGGGACAGTGGAAAGCCTTATGAACAAGCTGCAAATCATGAAATTCCTATGGTGGTTCGAGTGTTTCGATATTATGCAGGTTGGGCAGATAAAATTCATGGGCTAACTGTTCCAGCTGATGGACCACACCATGTGCAAACCTTGCATGAGCCTATTGGAGTAACAGCGCAGATTGTTCCTTGGAATTTCCCTCTTCTTATTTATTCGTGGAAGGTTGCGCCGGCATTAGCCTGCGGTAACACGGTTGTGTTGAAAACTGCAGAGCAGACACCACTCTCAGCACTCATTGTATCAAAATTATTACTCGAGGCAGGACTTCCTCCTGGAGTACTAAACATCATCTCCGGCTTCGGTCCGACTGCGGGTGCAGCTCTATGTAGTCACATGAATGTTGACAAGATTGCTTTCACAGGATCCACTGGCACCGGTAAGATTGTTCTAGGACTTTCTGCACAAAGCAATCTAAAACCAGTGACATTGGAGCTTGGTGGAAAATCTCCCTTCATTGTTTGCAGGGACGCTGATATTGATGTAGCTGTTGAGGCTGCTCATTCTGCCTTGTTCTTTAACCAGGGTCAATGTTGTTGTGCTGGTTCGCGCACATTTGTACATGAAAGCATATATGATGAATTCGTGGAAAAATCGAAAGCTCGAGCCCTTAAACGTGTAGTAGGAGACCCTTTCAGAAGTGGGGTTGAGCAAGGTCCCCAGATTGATTCTGTGCAATTTGAGAAGATCCTAAATTACATTAAATCAGGAATTGAAAATGGTGCTAAACTTGAGTCTGGTGGTGAAAGATTTGGCTCCAAAGGCTACTATATCCAACCTACTGTTTTCTCCAATGTTCAGGACAATATGTTGATAGCAAAAGATGAGATCTTTGGTCCAGTACAAACAATCTTGAAATTCAGGGATATAGAGGAAGTGGTACACAGAGCAAATTCAACTTCTTATGGCCTGGCTGCTGGTGTCTTTACCAAGTCCATAGACACTGCTAACACATTGATGCGCGCATTGCGAGTTGGGACGGTTTGGATCAACTGCTATGATGTCTTCGATGCGGCCATACCTTTTGGCGGTTACAAGATGAGTGGACAAGGGAGAGTGAGGGGAGTCTATGGCCTTAGCAGCTACCTTCAAGTTAAAGCTGTTGTTACTCCTTTGAAGAATCCAGCATGGTTGTAG 1605 0.4411 MATRVLSSLRSASLSSASPSIGLYCRWVRSISGISASSAAETEPVTPPVQIDHTQLLIDGNFVDAASGKTFPTFDPRTGEVIANVAEADSEDVNRAVSAARQAFDEGPWPKMTAYERSRILFRFADLLEKHNDEVAAIETWDSGKPYEQAANHEIPMVVRVFRYYAGWADKIHGLTVPADGPHHVQTLHEPIGVTAQIVPWNFPLLIYSWKVAPALACGNTVVLKTAEQTPLSALIVSKLLLEAGLPPGVLNIISGFGPTAGAALCSHMNVDKIAFTGSTGTGKIVLGLSAQSNLKPVTLELGGKSPFIVCRDADIDVAVEAAHSALFFNQGQCCCAGSRTFVHESIYDEFVEKSKARALKRVVGDPFRSGVEQGPQIDSVQFEKILNYIKSGIENGAKLESGGERFGSKGYYIQPTVFSNVQDNMLIAKDEIFGPVQTILKFRDIEEVVHRANSTSYGLAAGVFTKSIDTANTLMRALRVGTVWINCYDVFDAAIPFGGYKMSGQGRVRGVYGLSSYLQVKAVVTPLKNPAWL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60454g00012 534 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 38 524 - -
Stsc60454g00012 534 SUPERFAMILY ALDH-like 50 528 IPR016161 GO:0016491
Stsc60454g00012 534 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 58 314 - -
Stsc60454g00012 534 CDD ALDH_F2BC 51 526 - -
Stsc60454g00012 534 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 328 339 IPR016160 GO:0016491
Stsc60454g00012 534 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 300 307 IPR029510 GO:0016491
Stsc60454g00012 534 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 68 524 IPR016162 GO:0016491
Stsc60454g00012 534 Pfam Aldehyde dehydrogenase family 62 524 IPR015590 GO:0016491
Stsc60454g00012 534 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 306 495 IPR016163 GO:0016620
Stsc60454g00012 534 FunFam Mitochondrial aldehyde dehydrogenase 2 306 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60454g00012 Stsc-Chr60454 112007 116330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60454g00012 1 534 Aldehyde Dehydrogenase Gene Family AT3G48000 73.048 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60454g00012 K00128 - gmx:100798892 910.598