Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60453g00025 ATGGCTTCTAACACTGTTCCTCCTCCCATGCCTCTAACCGTTGTCGGTTACGTCACTGTTACCACTCCACCTAAACACTCTCATCACTCGCACCATCACCGTCTTGCCTTTCTCTTAACAGTAACAGTCATTGCCGTTACCTTCTTCATCTTCGCTCTCTATTTCCTCTTCCGTGAACTCAGCCGTTACTTCCGCCGTCAAGCTCATCCAACTAGCACGCGCACATCATCTGCGGTCTTCCCCACTGGTGGTGGTGGCAGCCGAGTATCGCCAGAGATCACTGCGCCTTCCGCCGTTGATTCCCTACCGCTGTTCACGTTCTCCTCCGTTACACGCCGCTCTTCTTCTTCCTCCGTCGTAGACGGTGGTGGAGGAGGTGACTGCGCCGTTTGCCTCTCCAGATTCGAGCAACGCGACCTCCTTCGCCTTCTTCCTCTCTGCTGCCACGCGTTCCATGCCGAATGCATCGACGTCTGGCTCCGAACGAATCTCACCTGTCCGCTCTGCCGATCGGCCGTGTTTGCTTCGGAATCCGACATCGGGAAGATTCTCCGGTCATCGTCCTCCGCCGTCGGCGACAGCTTCCGCCTCGAGATAGGTAGCATCAGTCGCCGCGGAACAGCCTCATCCGCCGCCGAAGAATCGCGCACAAGGACGTATTCTGTTGGCGAGTTCGATTACCTCGTCGACGAGGACGTTGAGATTCCGTATAGTCAAGCTCGCCGGAGAAACGATTCCGGCGAAAAGGATGATGGTGCGGCGGCGGTGGAATCAGCGGGTTTGAGCTTGGTAGGCGAGGTAGGAAGCAGATGGAGCTGGAAGGATTATTATGATTTGGTTTCAGCTTCGGTATCTTCAACGGTGTCGTTTCGAAGCTCTGGAAGGTTCTTGACTGGGAGTAGCAGGCGAAACGACGTCGTTTCAATTGGAGATTATGAAGGGGAAGCCAACCGTTTTGGGGAAGAAATCAGCGAAGTCTTTCGATGGCTTTCAATGGCATAA 1002 0.5469 MASNTVPPPMPLTVVGYVTVTTPPKHSHHSHHHRLAFLLTVTVIAVTFFIFALYFLFRELSRYFRRQAHPTSTRTSSAVFPTGGGGSRVSPEITAPSAVDSLPLFTFSSVTRRSSSSSVVDGGGGGDCAVCLSRFEQRDLLRLLPLCCHAFHAECIDVWLRTNLTCPLCRSAVFASESDIGKILRSSSSAVGDSFRLEIGSISRRGTASSAAEESRTRTYSVGEFDYLVDEDVEIPYSQARRRNDSGEKDDGAAAVESAGLSLVGEVGSRWSWKDYYDLVSASVSSTVSFRSSGRFLTGSSRRNDVVSIGDYEGEANRFGEEISEVFRWLSMA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60453g00025 333 SUPERFAMILY RING/U-box 127 176 - -
Stsc60453g00025 333 CDD RING-H2_EL5-like 128 170 - -
Stsc60453g00025 333 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Stsc60453g00025 333 FunFam E3 ubiquitin-protein ligase ATL6 87 176 - -
Stsc60453g00025 333 Pfam Ring finger domain 127 170 IPR001841 -
Stsc60453g00025 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 34 266 - -
Stsc60453g00025 333 SMART ring_2 128 169 IPR001841 -
Stsc60453g00025 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 179 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60453g00025 Stsc-Chr60453 181391 182392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60453g00025 38 170 C3H Transcription Factor Family AT2G34990 40.288 2.08e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60453g00025 K10663 - gmx:100804962 275.789