Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60453g00024 ATGATGTTCCATTTTCAGGGTTCTTCAAGGAATTCTAGTCTCCTTGCTGTCCTGAGCGGTGGTAAATCATGTGAGGATCAGCAAAAGGACAAGCAAGAAGAAGCTTCGGCTTCTGAGAATCAACCACAATACCCCTTTCCGGAGCTTTCTTCCTGTGGTAGGCTAGAGGTGACGGTACTAACTAAACCTACTGCCGATGAACTCAGTCGAGTACTTGAGCAACTGCAGCCAGATTTTGTTTACCTGCAAGGTAGACAGCTAGAAGATAGTGGAGAAATCGGGTCTCTTATATGGGAAGATTTTGACCTGTCTAGTCCAGAAGCCTTATTTCGATTATTTTCTTCAAAATTACCTAATACTGTTTATTTGGAAACACCTAAGGGAGAAAAGTTGGCAGAGGCACTCCACTCTAAGGGAATTCCTTACACCATATATTGGAAAAATGACTTTTCAAAGTACGCAGCTTCACATTTCCATCAAGCTTTGTTCTCGGTGGCACAGAGTACATCCAGTCACACATGGGATGCTTTCCAGCTTGCTCTTGCAACTTACAGACTATACTGTGTGCGAAATAATGTCTTTCCTCCTAACAATAATAAAGGTGGTGGTAAGCTTGGGCCACAAATTCTTGGCGACCCTCCCAATATTGATGTTGGTCCAAGTGAAGCAGACATAGAACATGAGGAGACTGAACCTGAGAGCATTTCTGCTATTACGATATATGATAATGCAGTGAACGTGAGATTTCTTGTTTGTGGAGTTGGTTGCACTTTGGATGCTTGTTTATTGGGGTCATTAGAGGATGGACTTAATGCTCTCCTATGTACAGAAATACGCGGGTGTAAACTTTACAACCGAACAAGTGCTCCACCGCCACCTCTCCAGGCAGCAACATTCTCACGTGGTGTGGTGACCATGCGTTGTGATATATCCACATGTAGTTCTGCTCATATATCACTTTTGGTGTCTGGTAATGCAGACACTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAAAAAGAGCTCATTGAGAAGGGTCAGCTTGTTCAAGCAGTTCCTAATCATGTACAAAGGAAGTTGTCTTACTCTGAGCCTCGAAGATCATCCTCAGTAGCCTGTGGATCAAGTGTCTTTGAAGTTTGCTTGCGTGTTCCTGCATGGGCTTCACAGATTCTGAGACAGCTGGCACCTAATCTATCATACCGTAGCCTAGTTATTTTGGGAGTTGCTAGTATTCAAGGATTGCCGGTTGCATCTTTTCATAAAGATGATGCTGAACGTCTCCTTTTTCTTTGTACTAGGCAGGTGAAAGAAAGCTCTACTAATGATCCTGTTTTCTCTTGGCATCCTACTTGGCTGATGCCTCCGGCACCTAGTCGAAAAAGATTTGAATCATGCTCTAGAAAAAAGTCTGATGATTTTCGTAGTGATAGACATAAATTATTAGATTTTGCTGCAATGAGACCAATCCCTCATTCTAATCATCATATGATTCTCCCGTTTTCGGGATCCTCTGAGGGTGAAAGGCATGATGGAGAACATGGAAAGTCAAATCCGTTACTTGCTCCTATTAAGCATAATGTTGCAGGCATAATTTCTGTACCAAATAGGAAATCTGCATCGAAGACATTTCAAGCTCATCAGGTTATTTATTTGAATCCGCTACCTATGAAAAAGCATCATTGTGATAGAGCTCCGATACGAGTTTGCTCTGAGGAGGAATTCCTGAGTGATGTGATGCAGTTTCTGCTCCATCGAGGGCATAATCGCCTAATCCCTCCAGGCGGGCTAGCTGAGTTTCCTGATGCCATTCTCAATGCAAAACGCCTTGATCTTTTCAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGATTTCATGTTGGGAATGGTATCAACTGGAAAGGGCAAGTTTTCTCAAAGATGCGCAATCACACTTTGACAAATAGAATGACGGTGTGGATCCTAATATTATCTCTGTTAATGATTGTTTCCTTACATTACACGTCATTTGCATTCAAGTTTGAACATAACTTGTTCAGGACTTAG 2049 0.4207 MMFHFQGSSRNSSLLAVLSGGKSCEDQQKDKQEEASASENQPQYPFPELSSCGRLEVTVLTKPTADELSRVLEQLQPDFVYLQGRQLEDSGEIGSLIWEDFDLSSPEALFRLFSSKLPNTVYLETPKGEKLAEALHSKGIPYTIYWKNDFSKYAASHFHQALFSVAQSTSSHTWDAFQLALATYRLYCVRNNVFPPNNNKGGGKLGPQILGDPPNIDVGPSEADIEHEETEPESISAITIYDNAVNVRFLVCGVGCTLDACLLGSLEDGLNALLCTEIRGCKLYNRTSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGNADTCFNDQLLENHIKKELIEKGQLVQAVPNHVQRKLSYSEPRRSSSVACGSSVFEVCLRVPAWASQILRQLAPNLSYRSLVILGVASIQGLPVASFHKDDAERLLFLCTRQVKESSTNDPVFSWHPTWLMPPAPSRKRFESCSRKKSDDFRSDRHKLLDFAAMRPIPHSNHHMILPFSGSSEGERHDGEHGKSNPLLAPIKHNVAGIISVPNRKSASKTFQAHQVIYLNPLPMKKHHCDRAPIRVCSEEEFLSDVMQFLLHRGHNRLIPPGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTVWILILSLLMIVSLHYTSFAFKFEHNLFRT 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60453g00024 682 Gene3D - 571 682 IPR036431 GO:0003677
Stsc60453g00024 682 SMART ARID_2 567 676 - -
Stsc60453g00024 682 ProSiteProfiles ARID domain profile. 570 680 IPR001606 GO:0003677
Stsc60453g00024 682 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 652 IPR042293 -
Stsc60453g00024 682 CDD ARID 572 646 - -
Stsc60453g00024 682 SUPERFAMILY ARID-like 571 680 IPR036431 GO:0003677
Stsc60453g00024 682 MobiDBLite consensus disorder prediction 25 47 - -
Stsc60453g00024 682 Pfam ARID/BRIGHT DNA binding domain 573 646 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60453g00024 Stsc-Chr60453 149469 156641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60453g00024 2 677 ARID Transcription Factor Family AT3G43240 59.205 0.0 788
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc60453g00024 ARID 2.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60453g00024 - - gmx:100808357 1006.51