Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60453g00023 ATGATGTTCCATTTTCAGGGTTCTTCAAGGAATTCTAGTCTCCTTGCTGTCCTGAGCGGTGGTAAATCATGTGAGGATCAGCAAAAGGACAAGCAAGAAGAAGCTTCGGCTTCTGAGAATCAACCACAATACCCCTTTCCGGAGCTTTCTTCCTGTGGTAGGCTAGAGGTGACGGTACTAACTAAACCTACTGCCGATGAACTCAGTCGAGTACTTGAGCAACTGCAGCCAGATTTTGTTTACCTGCAAGGTAGACAGCTAGAAGATAGTGGAGAAATCGGGTCTCTTATATGGGAAGATTTTGACCTGTCTAGTCCAGAAGCCTTATTTCGATTATTTTCTTCAAAATTACCTAATACTGTTTATTTGGAAACACCTAAGGGAGAAAAGTTGGCAGAGGCACTCCACTCTAAGGGAATTCCTTACACCATATATTGGAAAAATGACTTTTCAAAGTACGCAGCTTCACATTTCCATCAAGCTTTGTTCTCGGTGGCACAGAGTACATCCAGTCACACATGGGATGCTTTCCAGCTTGCTCTTGCAACTTACAGACTATACTGTGTGCGAAATAATGTCTTTCCTCCTAACAATAATAAAGGTGGTGGTAAGCTTGGGCCACAAATTCTTGGCGACCCTCCCAATATTGATGTTGGTCCAAGTGAAGCAGACATAGAACATGAGGAGACTGAACCTGAGAGCATTTCTGCTATTACGATATATGATAATGCAGTGAACGTGAGATTTCTTGTTTGTGGAGTTGGTTGCACTTTGGATGCTTGTTTATTGGGGTCATTAGAGGATGGACTTAATGCTCTCCTATGTACAGAAATACGCGGGTGTAAACTTTACAACCGAACAAGTGCTCCACCGCCACCTCTCCAGGCAGCAACATTCTCACGTGGTGTGGTGACCATGCGTTGTGATATATCCACATGTAGTTCTGCTCATATATCACTTTTGGTGTCTGGTAATGCAGACACTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAAAAAGAGCTCATTGAGAAGGGTCAGCTTGTTCAAGCAGTTCCTAATCATGTACAAAGGAAGTTGTCTTACTCTGAGCCTCGAAGATCATCCTCAGTAGCCTGTGGATCAAGTGTCTTTGAAGTTTGCTTGCGTGTTCCTGCATGGGCTTCACAGATTCTGAGACAGCTGGCACCTAATCTATCATACCGTAGCCTAGTTATTTTGGGAGTTGCTAGTATTCAAGGATTGCCGGTTGCATCTTTTCATAAAGATGATGCTGAACGTCTCCTTTTTCTTTGTACTAGGCAGGTGAAAGAAAGCTCTACTAATGATCCTGTTTTCTCTTGGCATCCTACTTGGCTGATGCCTCCGGCACCTAGTCGAAAAAGATTTGAATCATGCTCTAGAAAAAAGTCTGATGATTTTCGTAGTGATAGACATAAATTATTAGATTTTGCTGCAATGAGACCAATCCCTCATTCTAATCATCATATGATTCTCCCGTTTTCGGGATCCTCTGAGGGTGAAAGGCATGATGGAGAACATGGAAAGTCAAATCCGTTACTTGCTCCTATTAAGCATAATGTTGCAGGCATAATTTCTGTACCAAATAGGAAATCTGCATCGAAGACATTTCAAGCTCATCAGGTTATTTATTTGAATCCGCTACCTATGAAAAAGCATCATTGTGATAGAGCTCCGATACGAGTTTGCTCTGAGGAGGAATTCCTGAGTGATGTGATGCAGTTTCTGCTCCATCGAGGGCATAATCGCCTAATCCCTCCAGGCGGGCTAGCTGAGTTTCCTGATGCCATTCTCAATGCAAAACGCCTTGATCTTTTCAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGATTTCATGTTGGGAATGGTATCAACTGGAAAGGGCAAGTTTTCTCAAAGATGCGCAATCACACTTTGACAAATAGAATGACGGGTGTTGGCAATACTTTGAAAAGACATTATGAGACTTATCTTTTAGAATATGAATTAGCTCACGACGATGTGGATGGGGAGTGTTGCTTGTTGTGTCACAGTAGTGCAGGCGGCGACTGGGTGAACTGTGGTATATGTGGTGAGTGGGCTCACTTTGGATGCGATAGGCGGCAGGGACTTGGGGCGTTTAAGGACTATGCTAAAATGGATGGGCTGGAGTACGTTTGTCCCCACTGCAGCATTTCAACTTACAGTAAAAAATCCCAGAAAACTGCAAATTGA 2238 0.429 MMFHFQGSSRNSSLLAVLSGGKSCEDQQKDKQEEASASENQPQYPFPELSSCGRLEVTVLTKPTADELSRVLEQLQPDFVYLQGRQLEDSGEIGSLIWEDFDLSSPEALFRLFSSKLPNTVYLETPKGEKLAEALHSKGIPYTIYWKNDFSKYAASHFHQALFSVAQSTSSHTWDAFQLALATYRLYCVRNNVFPPNNNKGGGKLGPQILGDPPNIDVGPSEADIEHEETEPESISAITIYDNAVNVRFLVCGVGCTLDACLLGSLEDGLNALLCTEIRGCKLYNRTSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGNADTCFNDQLLENHIKKELIEKGQLVQAVPNHVQRKLSYSEPRRSSSVACGSSVFEVCLRVPAWASQILRQLAPNLSYRSLVILGVASIQGLPVASFHKDDAERLLFLCTRQVKESSTNDPVFSWHPTWLMPPAPSRKRFESCSRKKSDDFRSDRHKLLDFAAMRPIPHSNHHMILPFSGSSEGERHDGEHGKSNPLLAPIKHNVAGIISVPNRKSASKTFQAHQVIYLNPLPMKKHHCDRAPIRVCSEEEFLSDVMQFLLHRGHNRLIPPGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAGGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKMDGLEYVCPHCSISTYSKKSQKTAN 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60453g00023 745 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 674 737 IPR013083 -
Stsc60453g00023 745 Gene3D - 565 673 IPR036431 GO:0003677
Stsc60453g00023 745 ProSiteProfiles ARID domain profile. 570 674 IPR001606 GO:0003677
Stsc60453g00023 745 SMART ARID_2 567 670 - -
Stsc60453g00023 745 SMART bright_3 571 675 IPR001606 GO:0003677
Stsc60453g00023 745 Pfam ARID/BRIGHT DNA binding domain 573 670 IPR001606 GO:0003677
Stsc60453g00023 745 SUPERFAMILY ARID-like 571 685 IPR036431 GO:0003677
Stsc60453g00023 745 SUPERFAMILY FYVE/PHD zinc finger 666 734 IPR011011 -
Stsc60453g00023 745 CDD PHD_ARID4_like 680 731 - -
Stsc60453g00023 745 MobiDBLite consensus disorder prediction 25 47 - -
Stsc60453g00023 745 CDD ARID 572 670 - -
Stsc60453g00023 745 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 745 IPR042293 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60453g00023 Stsc-Chr60453 149443 156641 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60453g00023 2 745 ARID Transcription Factor Family AT3G43240 64.123 0.0 965
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc60453g00023 ARID 9.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60453g00023 - - gmx:100808357 1192.56