Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60453g00022 ATGCAAAGCATAGTTAATCTGGTCAAACAATTCACTTACGCAATGAGCCTCCAGCCCCCTCTGAATCCCCAAACAGGGACACCATCATCAAACACTCCTCCTCCTCCAAACGATGTAATCGACGTTGACACTTTCGTCTCCACCCCACTCTCTGAGAAGGGCACACACAAAACCACACCCATCTCCGTTGAACACTACGCCCAAGACAAGGACCTCGAACTCGCAATCGCCGCCTCCCTCGGCCTCCCACTCCCTCACCACCTCATCAACCTCTCTGACGATGACGATGACGTCAGCATCCTCGCTGCAAAACCCGAAAACACCCCTTTCGGGAGACGAAGAAAGACGGAGAAAGAGAAAGGCGAGTCCTCCTTCAGCGCGCCGCAGTTCCTCTGCGAAATCTGCACCGAAACGAAGTCATTGGAGGAATCTTTCGGCGTCACCGGCTGCCACCACTCTTACTGCAACGACTGCGTGGTGCTGTACATTGGATCGAAGCTTCAGGAGAATGTGATCAACATTCGGTGTCCGGTGCCGGAATGCAAGGGGCTTTTGGAGCTGGAAGATTGCCGTGAGATTCTTCCGAAGGAGGTTTTCGATCGGTGGGGGGTGGCATTGTGTGAGGCTGTGGTTGTTGAAGGTGAGAGATTCTATTGCCCTTTCAAGGACTGCTCGGCGCTTTTGATCGACGACGGGAGAGAGGTGGTGAGGGAATCGGAGTGCCCTAACTGTAGGAGGCTGTTCTGTGCGCAGTGCAAGGTGGCTTGGCATGCTGGGATTGAGTGCAAGGAGTTTCAGATGCTGAATAAGGATGAGAGGGAGAAGGAGGATATCATGCTCATGAATTTGGCTAAAACCAAGAAGTGGAGGAGGTGCCCCAAGTGCAAGTACTATGTTGAGAAATCTGACGGCTGCATGTACATGAAATGCAGGTGTGGATATGCCTTCTGTTACCACTGTGGAGCTCGTGGCAATAACAATACCCACCATTGCAGCTCCTGCAACCGTTAA 1011 0.5242 MQSIVNLVKQFTYAMSLQPPLNPQTGTPSSNTPPPPNDVIDVDTFVSTPLSEKGTHKTTPISVEHYAQDKDLELAIAASLGLPLPHHLINLSDDDDDVSILAAKPENTPFGRRRKTEKEKGESSFSAPQFLCEICTETKSLEESFGVTGCHHSYCNDCVVLYIGSKLQENVINIRCPVPECKGLLELEDCREILPKEVFDRWGVALCEAVVVEGERFYCPFKDCSALLIDDGREVVRESECPNCRRLFCAQCKVAWHAGIECKEFQMLNKDEREKEDIMLMNLAKTKKWRRCPKCKYYVEKSDGCMYMKCRCGYAFCYHCGARGNNNTHHCSSCNR 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60453g00022 336 SUPERFAMILY RING/U-box 273 335 - -
Stsc60453g00022 336 MobiDBLite consensus disorder prediction 18 40 - -
Stsc60453g00022 336 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 96 334 IPR031127 GO:0004842|GO:0016567
Stsc60453g00022 336 CDD Rcat_RBR_unk 288 323 - -
Stsc60453g00022 336 ProSiteProfiles TRIAD supradomain profile. 128 336 IPR044066 -
Stsc60453g00022 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 211 IPR013083 -
Stsc60453g00022 336 SMART ibrneu5 200 262 IPR002867 GO:0008270
Stsc60453g00022 336 SMART ibrneu5 272 334 IPR002867 GO:0008270
Stsc60453g00022 336 SUPERFAMILY RING/U-box 128 209 - -
Stsc60453g00022 336 ProSitePatterns Zinc finger RING-type signature. 150 159 IPR017907 -
Stsc60453g00022 336 FunFam RBR-type E3 ubiquitin transferase 264 336 - -
Stsc60453g00022 336 SMART ring_2 292 334 IPR001841 -
Stsc60453g00022 336 SMART ring_2 132 181 IPR001841 -
Stsc60453g00022 336 Gene3D - 259 336 - -
Stsc60453g00022 336 FunFam RBR-type E3 ubiquitin transferase 127 213 - -
Stsc60453g00022 336 SUPERFAMILY RING/U-box 207 266 - -
Stsc60453g00022 336 ProSiteProfiles Zinc finger RING-type profile. 132 180 IPR001841 -
Stsc60453g00022 336 MobiDBLite consensus disorder prediction 102 122 - -
Stsc60453g00022 336 CDD BRcat_RBR_unk 213 265 - -
Stsc60453g00022 336 MobiDBLite consensus disorder prediction 108 122 - -
Stsc60453g00022 336 Pfam IBR domain, a half RING-finger domain 213 262 IPR002867 GO:0008270
Stsc60453g00022 336 Pfam IBR domain, a half RING-finger domain 283 327 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60453g00022 Stsc-Chr60453 147313 149290 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60453g00022 132 322 C3H Transcription Factor Family AT2G19610 29.851 1.33e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60453g00022 K11975 - qsa:O6P43_021976 407.912