Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60453g00016 ATGGGCAACAAGCTTGGAACACCATGCACATGCATCCCTGTAATAAGAATCAAAAGAAAGGGAAGAAGTAGAAGATCATCAGCTGCTGCTAATTTTTCTTCCATCACTGATTTGAGCCTTGAAAATTTCCTTGATACCATTGATGAAGAAACTCCTACACCTTTTGAAGAAGTCCCATCATTTCTTTGCCAAATCTGCTTCGAATCGAAGCCTCTAAACCGGTCCTTCGACTTGCAGGGATGCCCACACTTCTATTGCCAAACATGCGTAGCCAAATACATTATGGCGAAGCTCAAAGACAACATTTTCAATCTGGTGTGCCCCGAGTCAAAATGCACTGGTTTCTTGAACCCTAATCACTGCAAACCGATTCTACCGAGCAATGTTTTGGAATGGTGGGGACGCGTTCTAAGCGAATCGGCGATCCCTGAGAATGTGAAATTGTATTGTCCTTTCAATGATTGCTCTGCACTGTTAATCACGAACAACAATGATGATGATGTGCAATCAGATTGTCCTCATTGCAAGAGAAGCATTTGTGTTAAGTGTAAGGTACCTTGGCACAGTGAATTGAGCTGTGAGAAATTTCAGGAATTGAAGAACAATAGCAATGATCTGATGCTGGATTTAGTGAAGAGAAGGAAGTGGAAACAGTGTCCTAATTGCAAGTGCTACGTTGAGAAGAAAGATGGCTGCGATTATATGACATGCAGGCGACAGATATTGAAAGAAAAGTCATCGGAGGATTGCTGGAAAGTTGACTTCGGCGGCGGCTTGCGGTAG 783 0.4291 MGNKLGTPCTCIPVIRIKRKGRSRRSSAAANFSSITDLSLENFLDTIDEETPTPFEEVPSFLCQICFESKPLNRSFDLQGCPHFYCQTCVAKYIMAKLKDNIFNLVCPESKCTGFLNPNHCKPILPSNVLEWWGRVLSESAIPENVKLYCPFNDCSALLITNNNDDDVQSDCPHCKRSICVKCKVPWHSELSCEKFQELKNNSNDLMLDLVKRRKWKQCPNCKCYVEKKDGCDYMTCRRQILKEKSSEDCWKVDFGGGLR 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60453g00016 260 ProSiteProfiles Zinc finger RING-type profile. 63 111 IPR001841 -
Stsc60453g00016 260 Gene3D - 191 252 - -
Stsc60453g00016 260 SUPERFAMILY RING/U-box 147 199 - -
Stsc60453g00016 260 Pfam IBR domain, a half RING-finger domain 147 193 IPR002867 GO:0008270
Stsc60453g00016 260 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 38 251 IPR031127 GO:0004842|GO:0016567
Stsc60453g00016 260 ProSitePatterns Zinc finger RING-type signature. 81 90 IPR017907 -
Stsc60453g00016 260 SMART ibrneu5 131 193 IPR002867 GO:0008270
Stsc60453g00016 260 SUPERFAMILY RING/U-box 206 237 - -
Stsc60453g00016 260 SUPERFAMILY RING/U-box 60 143 - -
Stsc60453g00016 260 ProSiteProfiles TRIAD supradomain profile. 59 260 IPR044066 -
Stsc60453g00016 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 145 IPR013083 -
Stsc60453g00016 260 CDD BRcat_RBR_unk 147 196 - -
Stsc60453g00016 260 FunFam RBR-type E3 ubiquitin transferase 59 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60453g00016 Stsc-Chr60453 108122 109488 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60453g00016 63 239 C3H Transcription Factor Family AT2G19610 30.000 1.07e-21 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60453g00016 K11975 - rcu:8259039 233.802