Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60452g00016 ATGGATGATTCCTCTAATAATAACAATAATAATACTTCTGAAGACACCAAGATTTGTCCCCGCGGTCACTGGCGACCCGCCGAAGATGAAAAACTTCGCCAACTTGTCGAACAATACGGTGCTCAGAACTGGAATTCCATTGCTGAAAAACTTCAAGGAAGATCAGGGAAAAGTTGTAGGTTAAGGTGGTTTAATCAGTTAGATCCAAGAATCAACAGAAGGCCGTTCACGGAGGAGGAAGAAGAGCGGTTACTGGCGGCGCACCGCATTCACGGCAACAAATGGGCTCTCATAGCGAGGCTGTTTCCGGGAAGAACAGATAACGCCGTGAAGAATCACTGGCACGTCATCATGGCAAGAAAGCAAAGAGAGCAATCCAAGCTCTGCGGTAAAAGAACCTTCCATGACATGATTTTCAGTAACAACAACAACAACGATTCAACTTCCTCTTCTTCTAATTCCAATAACATCATCAAGAGACCCAGAGTAATCGGCTTAGAACATTCCAGATTCTTCGATTTTCGCAGCAAAGATAGTAGTAGTAGTAGGATCATAGTTGCAGCAGCTGATACTACTAGTATTACTCCTCCTTCTACAACTACTTGGAATTTTTCATCTAAAGGCGGAGTCGGAGGAGGAGGAAAAGACTACTTTACCATCAACGGTTCTAATATTTATCTTCAAGAAGGTTCTAGAACCTCCGATATATTCCATTACAGAGTTTTTCCGGCTCCTACTACTACTGATGCTACTACTGCACCATTTGCCTCTAATGGATTCTCTTCATCGCTCCAGAACTACAAGAGGATCGTTCCGAATCCTTTCGCCTTCCTCGCCTCTTCGGATACTAATGGTAGAATAAAGCAGCGGGACTTGAAGTTGAAGGAGAAAGAAGAAGACGACGACGATCATCTGCCTAAAAATGAAGTTCCCTTCATTGATTTTTTGGGGGTGGGTGTCTCTTCTTCTTGA 972 0.4352 MDDSSNNNNNNTSEDTKICPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRTFHDMIFSNNNNNDSTSSSSNSNNIIKRPRVIGLEHSRFFDFRSKDSSSSRIIVAAADTTSITPPSTTTWNFSSKGGVGGGGKDYFTINGSNIYLQEGSRTSDIFHYRVFPAPTTTDATTAPFASNGFSSSLQNYKRIVPNPFAFLASSDTNGRIKQRDLKLKEKEEDDDDHLPKNEVPFIDFLGVGVSSS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60452g00016 323 PANTHER MYB PROTEIN-RELATED 21 154 - -
Stsc60452g00016 323 FunFam MYB transcription factor 74 148 - -
Stsc60452g00016 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 67 IPR017930 -
Stsc60452g00016 323 MobiDBLite consensus disorder prediction 1 17 - -
Stsc60452g00016 323 ProSiteProfiles Myb-like domain profile. 21 67 IPR001005 -
Stsc60452g00016 323 FunFam MYB transcription factor 21 72 - -
Stsc60452g00016 323 CDD SANT 75 115 IPR001005 -
Stsc60452g00016 323 Gene3D - 75 136 - -
Stsc60452g00016 323 Pfam Myb-like DNA-binding domain 24 84 - -
Stsc60452g00016 323 CDD SANT 24 65 IPR001005 -
Stsc60452g00016 323 Gene3D - 21 72 - -
Stsc60452g00016 323 Coils Coil 320 323 - -
Stsc60452g00016 323 MobiDBLite consensus disorder prediction 1 23 - -
Stsc60452g00016 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Stsc60452g00016 323 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Stsc60452g00016 323 SMART sant 72 120 IPR001005 -
Stsc60452g00016 323 SMART sant 20 69 IPR001005 -
Stsc60452g00016 323 SUPERFAMILY Homeodomain-like 20 114 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60452g00016 Stsc-Chr60452 130651 132040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60452g00016 18 136 MYB Transcription Factor Family AT1G17950 79.832 2.52e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc60452g00016 Myb_DNA-bind_6 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60452g00016 K09422 - gmx:100817328 299.286