Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60452g00015 ATGTCTCAGGGAAGAGGCAGTGCATCTTTACTTATGGTTATGGCCACCTTGGTCCCTCTTATGTGTCTGTTGTTTCTGGTGGAACCTTCAAATGCTGCAACTTACACTGTTGGAGGACCTGCGGGATGGTCCTTCAACACAAATTCTTGGCCAAATGGAAAAACATTCAAAGCTGGTGATGTGCTAGTTTTCAACTATGATTCAAGCACACACAATGTGGTTGCTGTGGACAAAAATGGATACAGCAGCTGCAAGACCTCAAAAGGTGCTAGAGTCTTCAGATCAGGGAAAGACCAAATCAAGCTCTCAAGAGGTGCAAATTACTTCATATGCAACTTCCCTGGGCACTGTGAATCTGGGATGAAGATTGCAATCAATGCAGCCTGA 387 0.447 MSQGRGSASLLMVMATLVPLMCLLFLVEPSNAATYTVGGPAGWSFNTNSWPNGKTFKAGDVLVFNYDSSTHNVVAVDKNGYSSCKTSKGARVFRSGKDQIKLSRGANYFICNFPGHCESGMKIAINAA 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60452g00015 128 CDD Plantacyanin 33 127 IPR041844 -
Stsc60452g00015 128 SUPERFAMILY Cupredoxins 33 127 IPR008972 -
Stsc60452g00015 128 ProSiteProfiles Phytocyanin domain profile. 33 128 IPR003245 GO:0009055
Stsc60452g00015 128 ProSitePatterns Type-1 copper (blue) proteins signature. 105 121 IPR028871 -
Stsc60452g00015 128 Gene3D - 33 127 IPR008972 -
Stsc60452g00015 128 PANTHER BLUE COPPER PROTEIN 27 126 IPR039391 GO:0009055
Stsc60452g00015 128 FunFam basic blue protein-like 33 127 - -
Stsc60452g00015 128 Pfam Plastocyanin-like domain 43 121 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60452g00015 Stsc-Chr60452 113944 115183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60452g00015 1 127 Phytocyanin Superfamily AT1G17800 37.500 3.48e-27 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60452g00015 - - gmx:100788635 207.608