Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60452g00011 ATGCAAGCAATGAAGCATACGCTAAACATTCATCAACTCATGGGTGAGCATTTATCAAAGCAGAGCCTTATTTTCCTCCTCCTCCTCAGCTTCTTAGCACTTCAAACTAATGCTGCTGCAACTCAACCCGCCAAACACTGCCTTAACAAATGCGGCAACGTCAGCATACCGTTCCCGTTTGGGACCACAGAAGACTGCTCCCTTGACACCAATTTCCTCATCAATTGCACCAACAATGTCCCTTACTTGCCCTTACCAAGACACGATACCCTAACTATCCTCAGCATATCCCTCGACGACAACGAACTCCGCGTTTTGTCGCCGGTAGCTACCGATTGCTATACCACCGACAACCAGGGCAGCATAATAATCAGCCACACTGAAAACGATCAGTATCTTTTATCCGGAAACTTGAGCATCTCATGGACTCGAAACACCTTCACCACCGTTGGTTGCACCACACTTGGATTAGTTGTTGGTTATAACAACCTTTCAGACGATGATCCAAGACCTTATCCCATAACATGCTTCTCCTACTGCAACAAACTCCAAGATGCGAGTAACGGCTCCTGCACCGGCACCGGCTGCTGCCGGAATAGTCTTCCCCGCCCCAGACAAGGCTGGTCGTCGGCGATCGGATTCTCCTTCGAGAATTCTGACCTCAATAACAGCCAAGTGAGTGATTTCAACCCTTGCGGATATGTGTTCTTGGTGGAAGAAGGTGGATATGAATTTGAGACGACACATTTGAAGAAGCTCGAGAATACTGAGTTTCCGGTGGTTCTGGATTGGAGTGTGGGGGATCAAACTTGTGTTGAAGCTATGAAGAACCCTTCGAGGTTCGCATGTAAAGCAGAGAACAGCACGTGTCATGATTCAGATAAGCGTCCTGGTTACGTTTGTAAATGCCCTTCTGGTTTTGAGGGTAACCCTTATCTCCTTAATGGTTGTCAACAAGATATTGATGAATGCGCGGGAGACAATGATTGCATCCAGGAAGCAAAATGCGAGAACATACGTGGAGGATACAATTGTTTGTGTCCTCTTGGATTTCTTGGAGACGGCATCTTAGCATTAGTTGTGGCAAGCTTTTTTGTGCATTGGAAAATGAACAAAAGAAAGCTCATCAAACTTAAAGAACAATATTTTCAACAAAATGGCGGTTCATTGTTGCAAGAACACATAGCCAAACACAGAAGCTCAAGCCAAATAGCCAAAGTCTTCACTATAGAGGAGCTAAGCAAGGCAACCAACAACTTTGATGAAGGCAAAATCCTCGGTCAAGGTGGCCAAGGAACAGTTTACAAAGGAGTATTATCAGATAACAAAACTGTTGCAATAAAAAAGTCCAAAATTAGTGACCCAAGCCAGATTAAGGACTTCATCAATGAGCTAGTTGTACTTTCACAAATCAACCATAAGAATGTGGTTAAGCTTTTGGGTTGTTGTTTGGAAACAGAAATTCCATTGCTTGTTTACGAATTCATTCCCAATGGTACCATTTTTGAGCATCTTCATGATCATGGATCATCACTAAGACTTACATGGAAAACAAGATTGAGAATAGCTGCAGAAACTGCAGCGGCATTAGCTTACTTGCATTTGGATACTTCTATGCCCATAATCCACAGGGATGTGAAAACCGCTAATATTCTACTTGATTATGATCTCACTGCAAAGGTTTCTGATTTTGGGGCTTCAAGATTTGTTCTTAAAGATACAACTGAGTTAGCCACTTTGGTACAAGGAACTTGGGGGTATCTTGACCCAGAATCCTTTCTTACAAGTCAACTAACAGATAAGAGTGATGTTTACAGTTTTGGAGTTGTTCTTGCAGAATTACTTACAGGAAGAAAAGCTCTCTGTTTTGACATGCCTGAACATGAGAAAAACCTTGCAATGTACTTTGTTTCTTCAATGAAACAGAATCGTTTGCTTGATATTGTAGACAAGAGCATAATAGATGAAGCAAAGGTTGAGCAAGTAAATGAATTTGCCAAGATTGCAAAACGATGTTTAAGCTCGAAAGGAGAAGAAAGGCCTACAATGAAAGAAGTGGCAATGGAGCTTGAGGGGCTTAGATCTGAGGAGAAACAGAGATGGTGGTGGGAGAAGGAGAAATTTTCCCCTGAAGAAACTGAAACCCTGGTCAAAGCAGCATCATCACCTACTATTAGCAATAATGTTGAAGATGGAATTGGTGGAAGTGGTTTCATTTATGGATTTGATGGCACTACCATAACTCAGATCTCCATCTCATGGGATGATGGAAGATGA 2277 0.4256 MQAMKHTLNIHQLMGEHLSKQSLIFLLLLSFLALQTNAAATQPAKHCLNKCGNVSIPFPFGTTEDCSLDTNFLINCTNNVPYLPLPRHDTLTILSISLDDNELRVLSPVATDCYTTDNQGSIIISHTENDQYLLSGNLSISWTRNTFTTVGCTTLGLVVGYNNLSDDDPRPYPITCFSYCNKLQDASNGSCTGTGCCRNSLPRPRQGWSSAIGFSFENSDLNNSQVSDFNPCGYVFLVEEGGYEFETTHLKKLENTEFPVVLDWSVGDQTCVEAMKNPSRFACKAENSTCHDSDKRPGYVCKCPSGFEGNPYLLNGCQQDIDECAGDNDCIQEAKCENIRGGYNCLCPLGFLGDGILALVVASFFVHWKMNKRKLIKLKEQYFQQNGGSLLQEHIAKHRSSSQIAKVFTIEELSKATNNFDEGKILGQGGQGTVYKGVLSDNKTVAIKKSKISDPSQIKDFINELVVLSQINHKNVVKLLGCCLETEIPLLVYEFIPNGTIFEHLHDHGSSLRLTWKTRLRIAAETAAALAYLHLDTSMPIIHRDVKTANILLDYDLTAKVSDFGASRFVLKDTTELATLVQGTWGYLDPESFLTSQLTDKSDVYSFGVVLAELLTGRKALCFDMPEHEKNLAMYFVSSMKQNRLLDIVDKSIIDEAKVEQVNEFAKIAKRCLSSKGEERPTMKEVAMELEGLRSEEKQRWWWEKEKFSPEETETLVKAASSPTISNNVEDGIGGSGFIYGFDGTTITQISISWDDGR 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60452g00011 758 FunFam Wall-associated receptor kinase 2 496 714 - -
Stsc60452g00011 758 ProSitePatterns Serine/Threonine protein kinases active-site signature. 541 553 IPR008271 GO:0004672|GO:0006468
Stsc60452g00011 758 ProSiteProfiles EGF-like domain profile. 320 354 IPR000742 -
Stsc60452g00011 758 SMART egfca_6 271 318 IPR001881 GO:0005509
Stsc60452g00011 758 SMART egfca_6 320 359 IPR001881 GO:0005509
Stsc60452g00011 758 Pfam Calcium-binding EGF domain 320 352 IPR001881 GO:0005509
Stsc60452g00011 758 SUPERFAMILY Protein kinase-like (PK-like) 401 690 IPR011009 -
Stsc60452g00011 758 SMART serkin_6 420 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60452g00011 758 ProSiteProfiles Protein kinase domain profile. 420 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60452g00011 758 FunFam Wall-associated receptor kinase 2 390 495 - -
Stsc60452g00011 758 CDD EGF_CA 320 354 - -
Stsc60452g00011 758 Gene3D Phosphorylase Kinase; domain 1 384 495 - -
Stsc60452g00011 758 Pfam Protein tyrosine and serine/threonine kinase 423 690 IPR001245 GO:0004672|GO:0006468
Stsc60452g00011 758 SUPERFAMILY EGF/Laminin 319 354 - -
Stsc60452g00011 758 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 336 347 IPR000152 -
Stsc60452g00011 758 Gene3D Laminin 270 355 - -
Stsc60452g00011 758 Pfam Wall-associated kinase 189 303 IPR013695 GO:0004674|GO:0016020
Stsc60452g00011 758 ProSitePatterns Calcium-binding EGF-like domain signature. 320 345 IPR018097 GO:0005509
Stsc60452g00011 758 Gene3D Transferase(Phosphotransferase) domain 1 496 715 - -
Stsc60452g00011 758 Pfam Wall-associated receptor kinase galacturonan-binding 47 105 IPR025287 GO:0030247
Stsc60452g00011 758 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 36 697 IPR045274 GO:0007166
Stsc60452g00011 758 SMART egf_5 323 366 IPR000742 -
Stsc60452g00011 758 SMART egf_5 270 318 IPR000742 -
Stsc60452g00011 758 FunFam Fibrillin 2 315 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60452g00011 Stsc-Chr60452 74714 77478 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60452g00011 24 717 Receptor kinase-like Gene Family AT1G21230 44.870 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc60452g00011 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60452g00011 - - ahf:112763839 1105.51