Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60452g00009 ATGGCTGAGCATTTATCAAAGCAGAGCCTTATTTTCCTCCTCCTACTCTTCTTAGCACTTCACCCTAACGATGCAGCAACTCAACCGGGCAAACACTGCCTTAACAAATGTGGCCACGTCAGCATTCCGTTCCCGTTTGGGACCACAGAAGACTGCTCCCTTGACACCAATTTCCTCATCAATTGCACCAACAATGTCCCTTACTTGCCCTTACCACCAATCCACACCATAACTGAAGAAAACAGTTTCCTTACTCTCCTAAGCATATCCCTCGAGGAGGACGAACTCCGCGTTCTGTCGCCGGTGGCTAGCGATTGCTATTCCGTCGACGACCGGGGCAAAATCATTGATAGTATTGAAACCGATCAGACTCTTGTCTCCGGAAACTTGAGCATCTCATGGACCCGAAACACCTTCATCACCGTTGGTTGTAAAACCCTTGGATTGGTTGCGAGTTACGAAAGTTATTCAGATGACTCGAGACCTTATCCCGTAACATGCTTCTCTTACTGCGACGAACTCCAAGATGCTATTAATGGATCCTGCACCGGCACCGGTTGTTGCCATAATAGTGTTCCCCGACCCACTCAAGGGTGGTCACCAATGATCGATTTTTGGTTTGAGAATTCTGACTTTAATAACAGCCAAGTGAGTAGCTTCAACCCTTGCGGTTATGTGTTCTTGGTGGAAGAAGGTGGCTATGAATTTGAGACGACACACCTGAAGAATCTGGAGAAAACTGAGTTTCCAGTGGTTCTAGATTGGAGTGTGGGGGATCAAACTTGTGTTGAAGCTATGAAGAACCCTTCCAGATTCGCATGTAAAGCAGAGAACAGCACGTGTCACGATTCCGATAAGCGTCCTGGTTACGTTTGCAAATGCCCTTCTGGTTTTGAGGGTAACCCTTATCTCCTTCATGGTTGTCAACAAGATATTGATGAATGTGCGGGAGCCAATGATTGCTTCCATGAAGCAAAATGCGAGAACATACCTGGTGGATACAATTGTTTGTGTCCTCATGGATTTCTGGGAGACGGCATCAGCATAGCATTCCTAGCATTAGTTGTGGCAATCTTTTATGTGCAGTGGAAATTGAACAAAAGAAAGCTCATCAAACTTAAACAACAGTATTTCCAACAAAATGGCGGTTCATTGTTGCAAGAACATATAGCCAAACATAGAAGCTCAAGCCAAATCGCCAAAGTCTTCACTATAGAGGAGCTAAGCAAGGCAACCAACAACTTTGATGAAGGCAAAATCCTCGGCCAAGGTGGCCAAGGAACAGTTTACAAAGGAGTTTTATCAGACAACAAAACCGTTGCAATAAAAAAGTCCAAAATTAGTGACCCAAGCCAAATCAAGGACTTCATCAATGAGTTAGTTGTACTTTCACAAATCAACCATAAGAATGTGGTTAAGCTTTTGGGTTGTTGTTTGGAAACAGAAATTCCATTGCTTGTTTATGAATTTATTCCCAGTGGCACCATTTTTGAGCATCTTCATGGTCATGGACCATCACTAAGACTCACATGGAAAACAAGATTGAGAATAGCCGCAGAAACTGCAGGGGCATTAGCTTACTTGCATTCGGATACTTGTATACCCATAATCCACAGAGATGTGAAAACAAGTAATATACTACTTGATCATAATCTCACTGCAAAGGTTTCTGATTTCGGAGCTTCAAGAATTGTTCCTCAAGATAAAACTGAGTTAGCCACTTTGGTGCAAGGAACTTGGGGTTATCTCGACCCGGAATCCTTTCTTACAAGTCAATTAACAGAGAAAAGTGATGTTTATAGTTTTGGAGTTGTTCTTGCAGAATTACTTACAGGAAGAAAAGCTCTCTGTTTTGACATGCCTGAACATGAGAAAAACCTTGCAATGTACTTTGTTTCTTCAATGAAACAGAATCGTTTGCTTGATATTGTAGACAAGAGCATAATACACGAAGCCAAGGTTGAGCAAGTAAATGAATTTGCCAAGATTGCGAAACAATGTTTAAGCTCGAAAGGAGAAGAAAGGCCTACAATGAAAGAAGTGGCAATGGAGCTTGAGGGGCTTAGAGCTGAGGAAAAACAGAGATTGTGGTGGGAGAAGGAGAAATTGTCCCTTGAAGAAACTGAAATCCTGGTCAAAGCATCATCACCTTCTATCAGCAATAATGGTGAAGATGCCATTTGTGGAAGTGCCTTCATTTATGGATTTGACGGGGAATATTGTATTTTATCATGA 2235 0.4251 MAEHLSKQSLIFLLLLFLALHPNDAATQPGKHCLNKCGHVSIPFPFGTTEDCSLDTNFLINCTNNVPYLPLPPIHTITEENSFLTLLSISLEEDELRVLSPVASDCYSVDDRGKIIDSIETDQTLVSGNLSISWTRNTFITVGCKTLGLVASYESYSDDSRPYPVTCFSYCDELQDAINGSCTGTGCCHNSVPRPTQGWSPMIDFWFENSDFNNSQVSSFNPCGYVFLVEEGGYEFETTHLKNLEKTEFPVVLDWSVGDQTCVEAMKNPSRFACKAENSTCHDSDKRPGYVCKCPSGFEGNPYLLHGCQQDIDECAGANDCFHEAKCENIPGGYNCLCPHGFLGDGISIAFLALVVAIFYVQWKLNKRKLIKLKQQYFQQNGGSLLQEHIAKHRSSSQIAKVFTIEELSKATNNFDEGKILGQGGQGTVYKGVLSDNKTVAIKKSKISDPSQIKDFINELVVLSQINHKNVVKLLGCCLETEIPLLVYEFIPSGTIFEHLHGHGPSLRLTWKTRLRIAAETAGALAYLHSDTCIPIIHRDVKTSNILLDHNLTAKVSDFGASRIVPQDKTELATLVQGTWGYLDPESFLTSQLTEKSDVYSFGVVLAELLTGRKALCFDMPEHEKNLAMYFVSSMKQNRLLDIVDKSIIHEAKVEQVNEFAKIAKQCLSSKGEERPTMKEVAMELEGLRAEEKQRLWWEKEKLSLEETEILVKASSPSISNNGEDAICGSAFIYGFDGEYCILS 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60452g00009 744 SUPERFAMILY Protein kinase-like (PK-like) 399 691 IPR011009 -
Stsc60452g00009 744 ProSitePatterns Calcium-binding EGF-like domain signature. 311 336 IPR018097 GO:0005509
Stsc60452g00009 744 Pfam Protein tyrosine and serine/threonine kinase 418 685 IPR001245 GO:0004672|GO:0006468
Stsc60452g00009 744 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 692 IPR045274 GO:0007166
Stsc60452g00009 744 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 327 338 IPR000152 -
Stsc60452g00009 744 Gene3D Phosphorylase Kinase; domain 1 379 490 - -
Stsc60452g00009 744 SUPERFAMILY EGF/Laminin 310 346 - -
Stsc60452g00009 744 SMART egf_5 314 352 IPR000742 -
Stsc60452g00009 744 SMART egf_5 261 309 IPR000742 -
Stsc60452g00009 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
Stsc60452g00009 744 Pfam Wall-associated receptor kinase galacturonan-binding 33 98 IPR025287 GO:0030247
Stsc60452g00009 744 Pfam Calcium-binding EGF domain 311 343 IPR001881 GO:0005509
Stsc60452g00009 744 Gene3D Transferase(Phosphotransferase) domain 1 491 710 - -
Stsc60452g00009 744 Gene3D Laminin 314 349 - -
Stsc60452g00009 744 FunFam Wall-associated receptor kinase 2 385 490 - -
Stsc60452g00009 744 FunFam Wall-associated receptor kinase 2 491 709 - -
Stsc60452g00009 744 SMART egfca_6 311 349 IPR001881 GO:0005509
Stsc60452g00009 744 SMART egfca_6 262 309 IPR001881 GO:0005509
Stsc60452g00009 744 CDD EGF_CA 311 345 - -
Stsc60452g00009 744 SMART serkin_6 415 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60452g00009 744 ProSiteProfiles EGF-like domain profile. 311 348 IPR000742 -
Stsc60452g00009 744 CDD STKc_IRAK 421 688 - -
Stsc60452g00009 744 FunFam Fibrillin 2 305 350 - -
Stsc60452g00009 744 Gene3D Laminin 261 313 - -
Stsc60452g00009 744 ProSiteProfiles Protein kinase domain profile. 415 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60452g00009 Stsc-Chr60452 58510 61623 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60452g00009 8 733 Receptor kinase-like Gene Family AT1G21250 43.586 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc60452g00009 PK_Tyr_Ser-Thr 3.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60452g00009 - - ahf:112763839 1144.03