Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60451g00020 ATGTCTGTGAGTCCACCAAGACAAAGAAGTAGCAGCACCAACAATAACATCAATGGATTCCAACTATACTGGTGCTTCCAGTGCAACCGCATGGTCCGAGCTGCACAAGATAGCAACCCATCATGCCCACGCTGCTTTGGTCAATTCATCCAAGAAATCAACATGCCAACACCAAGACTCTTCCTTGACTTCACCACCAACGATCCTTCTCCACACCCGCGCCTTCTAGAAGCTCTCTCTCTCATGCTCGATCCCGCTTTCCAACAACCCCGCCGCCGCCCCCGCATCCGCCGCCGCCAACCTTCCGACACGCCCGACCCCAACCCTACAACTCGTCCCCGGACCTGGATCATTGTCCATCCCATCGGTGCTTCCCCGGAGGAGCTCGAATCCATGGTTCCGCCGCGCCGCGACCGTCCGGTGGTGCCGCGTGGGGTGGACTCTAGGGACTACTTTCTTGGTCCAGGATTAAACGAGCTGATCGAGCAGATTACCGAGAACGATAGGCCGGGGCCGGCACCGGCACCGGAGAGAGCAATAAGAGGGATACCCCGGGTGAAGATAGAGGGGCATCACCTGAAGGAGAACTCGCAGTGTCCGGTTTGTCAGGAAGAGTTTGAGGTTGGTGAGGAAGTGAGGGAGCTTCCGTGTAAACATGTTTATCACTCTGATTGCATTGTTCCCTGGCTCAGGCTTCATAATTCTTGTCCTGTTTGCCGCCATGAGGTGCCCGATCATGATGATGATGATGATGAGTGTGTTGGTGAGGGTAGGTTCCGGAGGTGCTTGAGGTGGACGAGGATTTCTTCTCTTTGGCCCTTCCATCACCGTCGACGTGTTCATCCTGCTGCTACTACTACTGCTGATCCAGAAGGAGGAGGACGGAATAACAATAATAATAATGCTTCCGGTTCTGGTTCTACTTCTACTGCTTCTCCCCGTGGAGCAACTTGA 954 0.543 MSVSPPRQRSSSTNNNINGFQLYWCFQCNRMVRAAQDSNPSCPRCFGQFIQEINMPTPRLFLDFTTNDPSPHPRLLEALSLMLDPAFQQPRRRPRIRRRQPSDTPDPNPTTRPRTWIIVHPIGASPEELESMVPPRRDRPVVPRGVDSRDYFLGPGLNELIEQITENDRPGPAPAPERAIRGIPRVKIEGHHLKENSQCPVCQEEFEVGEEVRELPCKHVYHSDCIVPWLRLHNSCPVCRHEVPDHDDDDDECVGEGRFRRCLRWTRISSLWPFHHRRRVHPAATTTADPEGGGRNNNNNNASGSGSTSTASPRGAT 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60451g00020 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 91 244 - -
Stsc60451g00020 317 SMART ring_2 199 239 IPR001841 -
Stsc60451g00020 317 FunFam E3 ubiquitin-protein ligase RING1-like 162 246 - -
Stsc60451g00020 317 MobiDBLite consensus disorder prediction 86 114 - -
Stsc60451g00020 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 246 IPR013083 -
Stsc60451g00020 317 Pfam Ring finger domain 198 240 IPR001841 -
Stsc60451g00020 317 Pfam zinc-ribbon 21 53 IPR039525 GO:0061630
Stsc60451g00020 317 ProSiteProfiles Zinc finger RING-type profile. 199 240 IPR001841 -
Stsc60451g00020 317 MobiDBLite consensus disorder prediction 281 317 - -
Stsc60451g00020 317 SUPERFAMILY RING/U-box 180 246 - -
Stsc60451g00020 317 CDD RING-H2_RNF126-like 198 240 - -
Stsc60451g00020 317 MobiDBLite consensus disorder prediction 290 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60451g00020 Stsc-Chr60451 185126 186558 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60451g00020 138 252 C3H Transcription Factor Family AT5G01980 41.880 1.33e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60451g00020 K11982 - gmx:100787399 332.413