Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc60451g00019 | ATGTCTGTGAGTCCACCAAGACAAAGAAGTAGCAGCACCAACAATAACATCAATGGATTCCAACTATACTGGTGCTTCCAGTGCAACCGCATGGTCCGAGCTGCACAAGATAGCAACCCATCATGCCCACGCTGCTTTGGTCAATTCATCCAAGAAATCAACATGCCAACACCAAGACTCTTCCTTGACTTCACCACCAACGATCCTTCTCCACACCCGCGCCTTCTAGAAGCTCTCTCTCTCATGCTCGATCCCGCTTTCCAACAACCCCGCCGCCGCCCCCGCATCCGCCGCCGCCAACCTTCCGACACGCCCGACCCCAACCCTACAACTCGTCCCCGGACCTGGATCATTGTCCATCCCATCGGTGCTTCCCCGGAGGAGCTCGAATCCATGGTTCCGCCGCGCCGCGACCGTCCGGTGGTGCCGCGTGGGGTGGACTCTAGGGACTACTTTCTTGGTCCAGGATTAAACGAGCTGATCGAGCAGATTACCGAGAACGATAGGCCGGGGCCGGCACCGGCACCGGAGAGAGCAATAAGAGGGATACCCCGGGTGAAGATAGAGGGGCATCACCTGAAGGAGAACTCGCAGTGTCCGGTTTGTCAGGAAGAGTTTGAGGTTGGTGAGGAAGTGAGGGAGCTTCCGTGTAAACATGTTTATCACTCTGATTGCATTGTTCCCTGGCTCAGGCTTCATAATTCTTGTCCTGTTTGCCGCCATGAGGTGCCCGATCATGATGATGATGATGATGAGTGTGTTGGTGAGGGTAGGTTCCGGAGGTGCTTGAGGTGGACGAGGATTTCTTCTCTTTGGCCCTTCCATCACCGTCGACGTGTTCATCCTGCTGCTACTACTACTGCTGATCCAGAAGGAGGAGGACGGAATAACAATAATAATAATGCTTCCGGTTCTGGTTCTACTTCTACTGCTTCTCCCCGTGGTGATCATTCAAGTTAA | 960 | 0.5396 | MSVSPPRQRSSSTNNNINGFQLYWCFQCNRMVRAAQDSNPSCPRCFGQFIQEINMPTPRLFLDFTTNDPSPHPRLLEALSLMLDPAFQQPRRRPRIRRRQPSDTPDPNPTTRPRTWIIVHPIGASPEELESMVPPRRDRPVVPRGVDSRDYFLGPGLNELIEQITENDRPGPAPAPERAIRGIPRVKIEGHHLKENSQCPVCQEEFEVGEEVRELPCKHVYHSDCIVPWLRLHNSCPVCRHEVPDHDDDDDECVGEGRFRRCLRWTRISSLWPFHHRRRVHPAATTTADPEGGGRNNNNNNASGSGSTSTASPRGDHSS | 319 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc60451g00019 | 319 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 93 | 244 | - | - | |
Stsc60451g00019 | 319 | SMART | ring_2 | 199 | 239 | IPR001841 | - | |
Stsc60451g00019 | 319 | Pfam | Ring finger domain | 198 | 240 | IPR001841 | - | |
Stsc60451g00019 | 319 | MobiDBLite | consensus disorder prediction | 86 | 114 | - | - | |
Stsc60451g00019 | 319 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 162 | 246 | IPR013083 | - | |
Stsc60451g00019 | 319 | MobiDBLite | consensus disorder prediction | 281 | 319 | - | - | |
Stsc60451g00019 | 319 | MobiDBLite | consensus disorder prediction | 290 | 319 | - | - | |
Stsc60451g00019 | 319 | Pfam | zinc-ribbon | 21 | 53 | IPR039525 | GO:0061630 | |
Stsc60451g00019 | 319 | ProSiteProfiles | Zinc finger RING-type profile. | 199 | 240 | IPR001841 | - | |
Stsc60451g00019 | 319 | SUPERFAMILY | RING/U-box | 180 | 246 | - | - | |
Stsc60451g00019 | 319 | FunFam | E3 ubiquitin-protein ligase RING1-like | 162 | 246 | - | - | |
Stsc60451g00019 | 319 | CDD | RING-H2_RNF126-like | 198 | 240 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc60451g00019 | Stsc-Chr60451 | 185126 | 186558 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc60451g00019 | 138 | 252 | C3H Transcription Factor Family | AT5G01980 | 41.880 | 1.16e-25 | 104 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc60451g00019 | K11982 | - | gmx:100787399 | 332.413 |