Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60451g00012 ATGAGCATCATAGGATTAGGATTGTTCCATTTAACGGTTCTCATTGGACGCCTACAAAGCGGTAGTCAAGGTCTTGTACAGAGGAGAGTAAAAAGCAAACTTAGAGAATATGATGTTGAGAAATGGATGAGTGATTGCTGCTTACCGGAGGACCTAAAATGGAGGGTAAGACGATCCGAAAAGTATAGTTGGGCTGGAACAAGCTGGGTCAAGGAAGAAATGCTTATGGAGAATATGTCAGAGGATCTCCAAAGAGACATAAGACGCCATCTCTTTAAATTTATCAAGAAAGTTCGAATTTTTTCCTTGATGGATGAGCCCATCTTTGATGCCATTTGTGAGAGATTAAGGCGACGTGTATACACTAGAGGAAGTAATATATTGTGTCGTGGTGACTTGGTTGAGAAGATGGTCTTTGTTGTGCATGGAAGACTAGAGAGCATCAATGAAGATGGAACTAGAGTTTGCTTATTCGATGAGGATGCTTGTGGCGAAGAACTATTGATATGGTGTCTTGAAAATTTGTTAGTTAGCACAGATGATAATAAATTACCGCCCCGTGAATGGAAGTTACTTAGCAGTAGGACGGTAACATGCTTAACCGACGTCAGGGCCTTTTCACTTCGAGCTGTTGACCTTGAAGAAGTGATTACCCTTTTTGCAAGATTCTTGCAGAATCCGAGTACACTGGCAGCCATAAGGTATGAATTGCCTTATTGGAGGTCCCTTGGAGCAAGCCGAATTCAGGCTGCATGGAGATACAAGAAGAATCGATTAGGAGGTTCTTCACAAGCAAATTAG 801 0.4182 MSIIGLGLFHLTVLIGRLQSGSQGLVQRRVKSKLREYDVEKWMSDCCLPEDLKWRVRRSEKYSWAGTSWVKEEMLMENMSEDLQRDIRRHLFKFIKKVRIFSLMDEPIFDAICERLRRRVYTRGSNILCRGDLVEKMVFVVHGRLESINEDGTRVCLFDEDACGEELLIWCLENLLVSTDDNKLPPREWKLLSSRTVTCLTDVRAFSLRAVDLEEVITLFARFLQNPSTLAAIRYELPYWRSLGASRIQAAWRYKKNRLGGSSQAN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60451g00012 266 ProSiteProfiles cAMP/cGMP binding motif profile. 100 169 IPR000595 -
Stsc60451g00012 266 SUPERFAMILY cAMP-binding domain-like 29 225 IPR018490 -
Stsc60451g00012 266 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 257 - -
Stsc60451g00012 266 Gene3D Jelly Rolls 98 222 IPR014710 -
Stsc60451g00012 266 SMART cnmp_10 100 235 IPR000595 -
Stsc60451g00012 266 Gene3D Helix hairpin bin 27 91 - -
Stsc60451g00012 266 CDD CAP_ED 100 217 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60451g00012 Stsc-Chr60451 115933 120473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60451g00012 18 173 Ion Channels AT3G17700 59.615 9.71e-58 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60451g00012 K05391 - gmx:100781973 322.398