Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60451g00011 ATGGTGTTGTTTGTTGTTCCAAACTACATGGGTACATCAGGAATGAATTATGCTAAGAATCTTTTGCATGCAGCTATTCTTGTTCAGTATATCCCCAGATTATTCCGGTTTCTACCTCTAATGCTTGATCAGTCTCCAACAGGGTTCATATTTATATCGGTCTTGGATAGTTTCATTATAGATCTTTTGATTTTTATACTATCTGGACATATTGTTGGGGCCAATTGGTACCTCTTTGGTCTACAGAGAGTTAATCAATGTTTGCGTGATGCCTGTCATAATTCTAATATTACCGGATGCATGGAATTCATAGATTGTGAACATAGCCGTTTGTCAAACCCAACATCACATGATTGGAATAACAATGCGAATGCTACTACCTGTTTTAGTTCCTTCCCTGGTGCTTCCACCACTTATGGGATCTATGCTAACGTTGTACCACTTGCTATACAAAAAGAATTCATCAAAAAATATGTATATGCATTGTTCTGGGGATTCCAGCAAATCTGTACTCTTGCTGGTAATCAAACCCCAAGCTCTTTTGAATGGGAAGTCCTTTTTGTGATGAGCATCATAGGATTAGGATTGTTCCATTTAACGGTTCTCATTGGACGCCTACAAAGCGGTAGTCAAGGTCTTGTACAGAGGAGAGTAAAAAGCAAACTTAGAGAATATGATGTTGAGAAATGGATGAGTGATTGCTGCTTACCGGAGGACCTAAAATGGAGGGTAAGACGATCCGAAAAGTATAGTTGGGCTGGAACAAGCTGGGTCAAGGAAGAAATGCTTATGGAGAATATGTCAGAGGATCTCCAAAGAGACATAAGACGCCATCTCTTTAAATTTATCAAGAAAGTTCGAATTTTTTCCTTGATGGATGAGCCCATCTTTGATGCCATTTGTGAGAGATTAAGGCGACGTGTATACACTAGAGGAAGTAATATATTGTGTCGTGGTGACTTGGTTGAGAAGATGGTCTTTGTTGTGCATGGAAGACTAGAGAGCATCAATGAAGATGGAACTAGAGTTTGCTTATTCGATGAGGATGCTTGTGGCGAAGAACTATTGATATGGTGTCTTGAAAATTTGTTAGTTAGCACAGATGATAATAAATTACCGCCCCGTGAATGGAAGTTACTTAGCAGTAGGACGGTAACATGCTTAACCGACGTCAGGGCCTTTTCACTTCGAGCTGTTGACCTTGAAGAAGTGATTACCCTTTTTGCAAGATTCTTGCAGAATCCGAGTACACTGGCAGCCATAAGGTATGAATTGCCTTATTGGAGGTCCCTTGGAGCAAGCCGAATTCAGGCTGCATGGAGATACAAGAAGAATCGATTAGGAGGTTCTTCACAAGCAAATTAG 1365 0.4022 MVLFVVPNYMGTSGMNYAKNLLHAAILVQYIPRLFRFLPLMLDQSPTGFIFISVLDSFIIDLLIFILSGHIVGANWYLFGLQRVNQCLRDACHNSNITGCMEFIDCEHSRLSNPTSHDWNNNANATTCFSSFPGASTTYGIYANVVPLAIQKEFIKKYVYALFWGFQQICTLAGNQTPSSFEWEVLFVMSIIGLGLFHLTVLIGRLQSGSQGLVQRRVKSKLREYDVEKWMSDCCLPEDLKWRVRRSEKYSWAGTSWVKEEMLMENMSEDLQRDIRRHLFKFIKKVRIFSLMDEPIFDAICERLRRRVYTRGSNILCRGDLVEKMVFVVHGRLESINEDGTRVCLFDEDACGEELLIWCLENLLVSTDDNKLPPREWKLLSSRTVTCLTDVRAFSLRAVDLEEVITLFARFLQNPSTLAAIRYELPYWRSLGASRIQAAWRYKKNRLGGSSQAN 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60451g00011 454 Gene3D Jelly Rolls 286 410 IPR014710 -
Stsc60451g00011 454 Pfam Ion transport protein 24 208 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc60451g00011 454 Gene3D Helix hairpin bin 215 279 - -
Stsc60451g00011 454 ProSiteProfiles cAMP/cGMP binding motif profile. 288 357 IPR000595 -
Stsc60451g00011 454 SUPERFAMILY cAMP-binding domain-like 218 413 IPR018490 -
Stsc60451g00011 454 SMART cnmp_10 288 423 IPR000595 -
Stsc60451g00011 454 SUPERFAMILY Voltage-gated potassium channels 20 210 - -
Stsc60451g00011 454 CDD CAP_ED 288 405 IPR000595 -
Stsc60451g00011 454 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60451g00011 Stsc-Chr60451 114976 120473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60451g00011 1 361 Ion Channels AT3G17700 55.647 4.44e-131 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60451g00011 K05391 - gmx:100785556 572.007