Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60450g00034 ATGGAGTTATCTCAACTTGGTTTCCTTGAAGAGCTTATGCTTGCTCCAAGAAAAGACACATGGAGTAGTACTCATGATGTCTTCTCTTCTGCTGCTGCTTGGAACTATGACCCTTTTCTTGAAACCCCTTCTTTCCTCACTTCTTCTTCTTCTTCCTATCCTCCTCCTCCTGCATTCTCACCACCTCCACCATCAGACCAAAGATTCATCATTGACTGCCCCTTCACCGCCTCATACCCTTTTTCCGATGATGCTTTCACAATGCCTGACCTTGACTCCTCCTACACCACCAAGTATGAATATGAATATGATGATGCAGCACCACCACCACCACCACTCACACACACCCATGAAGATGTCGATGATGATAATGACAACAATAATAACAACAACCCTTCAGTGCTGGAGGATGAAGATCCTGGATTTCTTGGCTGCAAGGTTGAGGAACAAGCCGTGCTGGATCTTCAGGTTAATGTTCCTGTGGTCTTCAACATGGGTTTGTGTGGGGTTGGGGACAAGAAGACCAAGTCCAAGAAGCTTCAAGGCCAGCCATCAAAGAATCTTATGGCTGAAAGAAGGAGACGGAAGCGCCTCAATGACCGTCTCTCTATGCTAAGATCAATTGTCCCCAAGATCAGCAAGATGGACAGGACTTCCATTCTTGGAGATACCATAGACTACATGAAAGAGCTTTTGGAAAGGATTAACAAATTGCAAGAGGAAGAAGTGGAGGAGGGCACAAGTCAGCAAAATCTCTTGGGGGTTTCTAAGGAACTCAAGCCAAATGAAGCAATGGTTAGAAATTCACCCAAGTTTGATGTTGAGAGGAGAGACAATGGCACCAGGATCAGCATCTGTTGTGCCACAAAGCCAGGATTGTTATTGTCAACAGTGAATACATTGGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTATAAGCAGCTTCAATGATTTCTCAATGCAAGCATCTTGTTCAGAGGTAGCTGAGCAGAGAGGTTGTGTTGACCCAGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGCTATGGTGGGAGATGCCTCTAG 1068 0.4504 MELSQLGFLEELMLAPRKDTWSSTHDVFSSAAAWNYDPFLETPSFLTSSSSSYPPPPAFSPPPPSDQRFIIDCPFTASYPFSDDAFTMPDLDSSYTTKYEYEYDDAAPPPPPLTHTHEDVDDDNDNNNNNNPSVLEDEDPGFLGCKVEEQAVLDLQVNVPVVFNMGLCGVGDKKTKSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERINKLQEEEVEEGTSQQNLLGVSKELKPNEAMVRNSPKFDVERRDNGTRISICCATKPGLLLSTVNTLEALGLEIQQCVISSFNDFSMQASCSEVAEQRGCVDPEEIKQALFRNAGYGGRCL 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60450g00034 355 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 83 349 - -
Stsc60450g00034 355 CDD ACT_UUR-ACR-like 281 322 - -
Stsc60450g00034 355 Gene3D - 171 232 IPR036638 GO:0046983
Stsc60450g00034 355 MobiDBLite consensus disorder prediction 102 140 - -
Stsc60450g00034 355 SMART finulus 188 237 IPR011598 GO:0046983
Stsc60450g00034 355 MobiDBLite consensus disorder prediction 46 65 - -
Stsc60450g00034 355 MobiDBLite consensus disorder prediction 172 196 - -
Stsc60450g00034 355 Coils Coil 221 241 - -
Stsc60450g00034 355 Pfam Helix-loop-helix DNA-binding domain 188 231 IPR011598 GO:0046983
Stsc60450g00034 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
Stsc60450g00034 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 244 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60450g00034 Stsc-Chr60450 199581 201802 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60450g00034 74 355 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 53.546 1.34e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60450g00034 HLH 7.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60450g00034 - - gmx:100806571 394.815