Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60450g00032 ATGATGGAGAAATCAGATAATTTGGTATTGTTAAGACAGGTTGTGGCATATCTCCTTTGTTTGTGCATATTTACCAGATCAGCTTCTGCAATTGAAGGATTTGAGAGCATAGCATGCTGTGCTGATTCAAACTATAAAGATCCATTGACCAACCTAGATTACCACACAGATTATGCTTGGTTCTCTGATAAAACAAGTTGCAGGCCAATAACTAGTGTGTTAAAACATTCAAGCAATGAAAGATTAAGAGTGTTTGAAATAGAGAAGGGAAAGAGATGCTACAATTTGGCTACAACTAAGGATCAAGTGTATCTGATTAGGGGCACATTTCCATCTGAAAATTCAGCAGGTAAAGCTTCCTTTGATGTTTCTATAGGGGTGAGAGAGTTAGGTGCAGTGATATCATCACCACAGGACTTGAGAATTGAAGGAGTTTTCAGAGCCACAAAGAACAACACAGACTTTTGCCTAGTGACAGAAGAGGGTAACCCTTATATATCTCTGCTTGAGCTAAGATCAGTGTCCGAAGAGTATCTGCAAGGTTTGAATTCTAGTGTCCTAAAGCTAATCAACAGAAGTAATCTTGGAGGAAATGAAGATGACATAAGGTACCCAACTGATCAAAGTGATAGAATCTGGGAAAGAACTACTACAATTCCATATACTCCTGTATCATTCAATATTAGCATTTTGGACCACAAATCCAAGGTGACACCTCCTCTGGAAGTTCTACAAACAGCTTTGACTCACCCTGAGAGGTTGGAATTCAACCACAATGGCCTCGAGGCGGAGGAGGACTACGAGTACCTTGTGTTTCTCTACTTCCTTGAATTGAATAACAGTGTTAGAGAAGGCCAAAGAGTGTTTGACATCTATGTTAACAGTGAGATTAAGAAGGCTAAGTTTGATGTATTAGGTGAAGGGTCAAATTATAGACACATTGCATTGAATGCTTCTTCTGCAAATGGATCACTTAATCTAACATTGGTCAAGGCATCTGGATCTGTGTTTGGACCCTCTTGTAATGCTTATGAGATCATGCAGGTGCGGCCATGGAAGCAAGAAACCAACCAAACAGACTTGAAAGCGATTTCGAAGATAAGAGAAGAACTAATCATTGAAAATCAAGATAACAAAGTCATGCAAAGCTGGACCGGCGACCCATGCATGCTTTTTGCATGGCATGGAATATCATGTGATTTTCCAAATGGTGCACCTGTTATCACAGAGTTGGATCTTTCCTTAAGTAATCTGAAAGGATCACTTCCATCAAGTGTCACAGAGTTGACCAATTTACAGATAATGAACCTTAGCCACAACAACTTCAATGGCTATATTCCCTCATTTCCAAGTTCCTCAATGCTCATTTCAGTAGATCTGAGCTACAATGATCTTATGGGGTCGCTTCCACAGTCATTTAACTCACTGCCACATTTAAAATCAATATATTATGGTTGCAATGATCGCATGAACCATGAGCCTTCATCATCAGGAAGCTTGAACATTTCAATCCTTACAGATAATGGAAGGTGTCAGCAAGAGAATAATTTTCCACAACAAGCAGTAATTATATCAGTTGTTGCATGTGGCTCTTTCTTGATTGCTATGGCTGTTGGAACAATTTTCGTTTGGCGTTATAGACAGAGATTAAATCCATTGGAAGCATTTGCAAGAAAAAGCAACCCAATGATAACAAATGTGATATTCTCATTGAACAGCATAGATGATTTCTTGATAAAATCTGTTTCAATTCAAGCATTCACTTTGGAATATATAGAGGTTGCCACCGTAAAGTATAAAACCTTGATAGGTGAAGGAGGCTTTGGTTCTGTCTACCGTGGCACCCTAGAGAATGGTCAAGTTGTGGCTGTGAAGGTTCGCTCTGCCACATCCACGCAGGGAACTCGAGAATTTGATAATGAGCTAAACCTGCTTTCTGCAATAAGGCATGAGAACCTGGTGCCTCTTCTTGGTTATTGTAATGAAAATGATCAACAAATTCTGGTTTATCCTTTTATGTCCAATGGCTCTTTGCAAGATAGACTATATGGGGAACTGTCAAAGAGAAAAATACTAGATTGGCCAACCAGACTCTCCATTGCTCTTGGTGCTGCTCGAGGTTTGGCATATTTGCACTCGTTCCCTGGGCGATCTGTAATTCACAGGGACGTGAAATCAAGCAATATACTTCTGGATCACAGCATGTGTGCTAAGGTTGCAGATTTTGGTTTCTCAAAATATGCTCCACAGGAAGGAGACAGTGCCGTTTCGCTCGAAGTAAGAGGAACGGCAGGATATCTTGATCCTGAGTACTACACAACCCAGCAACTATCTGCAAAGAGTGATGTCTTTAGCTTTGGTGTGGTTCTTCTTGAAATTGTGAGTGGCCGGGAGCCTCTCAACATCCACAGACCGCGGAATGAGTGGAGTTTGGTTGAATGGGCTAAACCGTATATAAGGGCATCGAAGATTGAGGAAATTGTGGATCCAGGCATCAAGGGAGGGTACCATGCAGAGGCAATGTGGAGAGTGTTGGAAGTAGCACTGCAATGTGTTGAGCCTTTCTCAACAAATAGACCGGCCATGGATGATGTCATGCGAGAGTTGGAAGATGCTCTGATCATAGAAAACAATGCATCAGAGTACATGAAGTCCATAGAAAGCATTGGATCCAACCGCTACTCCATTGTCCTAGAGAAAAGGGGGCTACCCTCAACTTCATCGATGGTAGAATCAACCATCATACCTCAATCCTTGAACCATCCGCAACCAAGATAG 2778 0.4118 MMEKSDNLVLLRQVVAYLLCLCIFTRSASAIEGFESIACCADSNYKDPLTNLDYHTDYAWFSDKTSCRPITSVLKHSSNERLRVFEIEKGKRCYNLATTKDQVYLIRGTFPSENSAGKASFDVSIGVRELGAVISSPQDLRIEGVFRATKNNTDFCLVTEEGNPYISLLELRSVSEEYLQGLNSSVLKLINRSNLGGNEDDIRYPTDQSDRIWERTTTIPYTPVSFNISILDHKSKVTPPLEVLQTALTHPERLEFNHNGLEAEEDYEYLVFLYFLELNNSVREGQRVFDIYVNSEIKKAKFDVLGEGSNYRHIALNASSANGSLNLTLVKASGSVFGPSCNAYEIMQVRPWKQETNQTDLKAISKIREELIIENQDNKVMQSWTGDPCMLFAWHGISCDFPNGAPVITELDLSLSNLKGSLPSSVTELTNLQIMNLSHNNFNGYIPSFPSSSMLISVDLSYNDLMGSLPQSFNSLPHLKSIYYGCNDRMNHEPSSSGSLNISILTDNGRCQQENNFPQQAVIISVVACGSFLIAMAVGTIFVWRYRQRLNPLEAFARKSNPMITNVIFSLNSIDDFLIKSVSIQAFTLEYIEVATVKYKTLIGEGGFGSVYRGTLENGQVVAVKVRSATSTQGTREFDNELNLLSAIRHENLVPLLGYCNENDQQILVYPFMSNGSLQDRLYGELSKRKILDWPTRLSIALGAARGLAYLHSFPGRSVIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSAVSLEVRGTAGYLDPEYYTTQQLSAKSDVFSFGVVLLEIVSGREPLNIHRPRNEWSLVEWAKPYIRASKIEEIVDPGIKGGYHAEAMWRVLEVALQCVEPFSTNRPAMDDVMRELEDALIIENNASEYMKSIESIGSNRYSIVLEKRGLPSTSSMVESTIIPQSLNHPQPR 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60450g00032 925 Gene3D - 188 350 - -
Stsc60450g00032 925 SUPERFAMILY Protein kinase-like (PK-like) 580 869 IPR011009 -
Stsc60450g00032 925 Gene3D Phosphorylase Kinase; domain 1 570 672 - -
Stsc60450g00032 925 Pfam Malectin-like domain 41 349 IPR024788 -
Stsc60450g00032 925 Gene3D Ribonuclease Inhibitor 357 528 IPR032675 -
Stsc60450g00032 925 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 673 889 - -
Stsc60450g00032 925 ProSiteProfiles Protein kinase domain profile. 597 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60450g00032 925 ProSitePatterns Serine/Threonine protein kinases active-site signature. 719 731 IPR008271 GO:0004672|GO:0006468
Stsc60450g00032 925 PANTHER OS07G0107800 PROTEIN-RELATED 36 873 - -
Stsc60450g00032 925 Gene3D Transferase(Phosphotransferase) domain 1 673 891 - -
Stsc60450g00032 925 Pfam Protein tyrosine and serine/threonine kinase 598 869 IPR001245 GO:0004672|GO:0006468
Stsc60450g00032 925 SMART serkin_6 597 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60450g00032 925 SUPERFAMILY L domain-like 380 499 - -
Stsc60450g00032 925 FunFam Nodulation receptor kinase 561 672 - -
Stsc60450g00032 925 ProSitePatterns Protein kinases ATP-binding region signature. 603 625 IPR017441 GO:0005524
Stsc60450g00032 925 FunFam Leucine-rich repeat receptor-like kinase 360 501 - -
Stsc60450g00032 925 CDD STKc_IRAK 603 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60450g00032 Stsc-Chr60450 180093 185047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60450g00032 20 876 Receptor kinase-like Gene Family AT1G67720 33.333 1.03e-123 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc60450g00032 Malectin_like 5.6e-46 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60450g00032 - - gmx:100781986 1263.83