LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60450g00030	ATGGCTTCCTCTTTCTGCAATCATCATCATCATCATCCACATACCCTTATTCCACTAATCATCCTATCCTTATTCATTTCCATCACTTTCCATCATGCTTACTCAATTCAATTCCAAGTCCCTGCTTTCAATCCTGGTGATGCCAACATACTCTACCTAGGATCTGCAGCATCAAGGGATGGTTCTGCTGATTTCAATGTGAATGACTTGTACACATGTCAAGTTGGATGGACCATCTACTCCAAAAAGGTGTTACTTTGGGACTCAAGATCTGGTAAACTCACTGATTTCACAACTCACTACTCATTCATCATTGACACACAAAATAAAACCAACTATGGTCATGGGCTTGCATTCTTCATTGCTCCTGTTGATTTTGATATCCCACCAAATTCCTCTGGTGGATTTCTTGGATTATTCAACACCACAACGAAGGATTCATCACGGAATCAAATTGTCCTGGTTGAGTTTGACTCTTTCCCAAACTCTGAATGGGGTGAGACTGTGCAGCATGTTGGGATCAATAACAATTCAATTGTTTCAACAAAGTGGACTCCTTGGAATACTAGTTTACACAGTGGAGACACTGCTAATGTTTGGATTAGTTACAACTCCACAACTAAGAACATGAGTGTGTCTTGGAAGTACCAAAACTCATCTGACCCTGAAGAACACACAAGTCTCTCTCTTGCAATTGATTTGACAAAGGTCTTGCCTGAGTGGGTCACAATTGGATTTTCTGCTGCAACAGGTTCCTTTGGAGAGACTCACACTCTTCTGTCATGGGAGTTCAACTCAACTTTGGACAGAACTGAAGAAAACAATTCAAAGAAGACAAGGTTAGTTGTGATTCTAACTGTTTCTTGTAGTGCTCTAGCAGTGGGAGCAATTGCAGCATACGGAGTACTTTGGAATAGGAGGAAGAAGAAAAGCAAGAAAGGTCAATCAGAGGCTATGAATTTAAGCTCAATCAATGATGACCTTGAAAGAGGAGCAGGACCAAGAAGGTTCTTGTACAAAGAACTTGCTTTGGCTACCAACAACTTCTCCAAAGAGAGGTTGTTGGGTAAAGGAGGGTTTGGATCTGTCTACAGAGGTTACTTTGCAAATCAAGATTTAACAGTTGCTGTGAAGAAGATATCAAGAGGATCTAGACAAGGGAAGAAAGAGTATGTAACTGAAGTCAAAGTCATTAGCCAACTCAGACACAGGAACCTTGTGCAACTCTTGGGTTGGTGCCATGACAAAGGGGAGTTCTTGCTTGTTTATGAGTTCATGCCGAATGGAAGCCTTGATTCTCACCTATTTGGTAGCAAAAAGTCACCAATCCCTTGGAATGTGAGGCACAAGATAGGACTTGGATTAGCATCTGCAGTGTTATATCTTCATGAAGAATGGGAGAGGTGTGTGGTGCATAGGGACATCAAATCAAGCAATGTTATGCTGGATTCAACCTTCAATGTGAAGCTAGGTGACTTTGGACTAGCCAAGCTCATGGACCATGAACTTGGTCCCCAAACAACAGGGATAGCTGGAACATTAGGGTACCTGGCACCAGAATACGTGAGCACAGGAAGGGCAAGTAAAGAATCTGATGTGTACAGCTTTGGTGTGGTGGCATTGGAGATAGCTACAGGGAGGAAAGCCCTTGATGTGATGGAAGAGTGTGACGGTGAAAAGGGATTGGTTGAGTGGGTTTGGGACCATTACGGAAGAGGGGAAGTGGTTAAGGCAGTTGATTCGAGGTTGGGGAAAGATTTTGATGAGAGGGAAGCAGAGTGCTTGATGGTTGTGGGGCTATGGTGTGCTCATCCTGATGCAAATATGAGACCGTCAATAAGACAAGCAGTTCATGTGCTTAATTTTGAAGCTGCTATGCCAATCAACCTTCCAACAAAGAGGCCTGTTGCAACATACCATGATCCTACCACTACACCAACACCAACACCATCAGTTCAACATTCCATAACCGCAAGCCTTCACATTGGTCGTTGA	1995	0.4296	MASSFCNHHHHHPHTLIPLIILSLFISITFHHAYSIQFQVPAFNPGDANILYLGSAASRDGSADFNVNDLYTCQVGWTIYSKKVLLWDSRSGKLTDFTTHYSFIIDTQNKTNYGHGLAFFIAPVDFDIPPNSSGGFLGLFNTTTKDSSRNQIVLVEFDSFPNSEWGETVQHVGINNNSIVSTKWTPWNTSLHSGDTANVWISYNSTTKNMSVSWKYQNSSDPEEHTSLSLAIDLTKVLPEWVTIGFSAATGSFGETHTLLSWEFNSTLDRTEENNSKKTRLVVILTVSCSALAVGAIAAYGVLWNRRKKKSKKGQSEAMNLSSINDDLERGAGPRRFLYKELALATNNFSKERLLGKGGFGSVYRGYFANQDLTVAVKKISRGSRQGKKEYVTEVKVISQLRHRNLVQLLGWCHDKGEFLLVYEFMPNGSLDSHLFGSKKSPIPWNVRHKIGLGLASAVLYLHEEWERCVVHRDIKSSNVMLDSTFNVKLGDFGLAKLMDHELGPQTTGIAGTLGYLAPEYVSTGRASKESDVYSFGVVALEIATGRKALDVMEECDGEKGLVEWVWDHYGRGEVVKAVDSRLGKDFDEREAECLMVVGLWCAHPDANMRPSIRQAVHVLNFEAAMPINLPTKRPVATYHDPTTTPTPTPSVQHSITASLHIGR	664

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc60450g00030	664	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	470	482	IPR008271	GO:0004672\|GO:0006468
	Stsc60450g00030	664	ProSitePatterns	Protein kinases ATP-binding region signature.	355	379	IPR017441	GO:0005524
	Stsc60450g00030	664	CDD	lectin_legume_LecRK_Arcelin_ConA	36	268	IPR001220	GO:0030246
	Stsc60450g00030	664	FunFam	Lectin-domain containing receptor kinase A4.3	426	641	-	-
	Stsc60450g00030	664	ProSiteProfiles	Protein kinase domain profile.	349	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc60450g00030	664	Gene3D	Phosphorylase Kinase; domain 1	334	425	-	-
	Stsc60450g00030	664	FunFam	L-type lectin-domain containing receptor kinase IX.1	334	425	-	-
	Stsc60450g00030	664	FunFam	L-type lectin-domain containing receptor kinase IX.1	34	277	-	-
	Stsc60450g00030	664	Pfam	Protein kinase domain	349	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc60450g00030	664	Gene3D	Transferase(Phosphotransferase) domain 1	426	641	-	-
	Stsc60450g00030	664	Pfam	Legume lectin domain	36	277	IPR001220	GO:0030246
	Stsc60450g00030	664	SUPERFAMILY	Protein kinase-like (PK-like)	333	647	IPR011009	-
	Stsc60450g00030	664	PANTHER	-	68	624	-	-
	Stsc60450g00030	664	Gene3D	-	33	293	-	-
	Stsc60450g00030	664	SMART	serkin_6	349	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc60450g00030	664	ProSitePatterns	Legume lectins alpha-chain signature.	238	247	IPR000985	-
	Stsc60450g00030	664	CDD	STKc_IRAK	355	621	-	-
	Stsc60450g00030	664	SUPERFAMILY	Concanavalin A-like lectins/glucanases	33	282	IPR013320	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60450g00030	Stsc-Chr60450	161478	163800	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60450g00030	19	640	Receptor kinase-like Gene Family	AT5G10530	57.006	0.0	724

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Stsc60450g00030		Pkinase	7.7e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60450g00030	-		-	qsa:O6P43_025188	878.626