Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60450g00027 ATGTTTATGATCTTCACTTCATTGATTGTTCTCTTCAACACTAACACTGTAGAGTCTGTTTCATTCAACTTTGATAATTTCATGCCAAATCTATACCTAATCAAATTCGAGGGAGATGCATTTTCCTCAGAACAAGTTTTACAGCTCACAAAGAACAGAATTGACGGCCCTATTACCAAAAGCGTTGGTCGTGCCTCCTTTGATCAACCGGTGAAGCTTTGGGATAAAGGAACCAGAAAACTCACTGACTTCACCACTCATTTCTCGTTTATTATGAAAGCTGTTGATCCCAACAAGTTTGGTGATGGATTATCATTCTTCATTGCACCCTTTGAATCAACCATCCCAAGCAATTCAACTGGAGGATTCCTTGGCCTCTTCAGCGAAGATTCTGCATTCAACAAAACTGCCAATCAAATAGTCGCTGTGGAGTTTGACAGCTTTATGAATGAATGGGATCCAAGCTCTAATCATGTTGGGATCAACGTCAATTCTATTAGATCTGTTACAAATGTGAGTTGGAATGGGAACATGAAGAACGGATCCGTTGCTAATGCTTGGATTTCATACAACTCCACCACCAAGAATCTCTCTGTGTTCCTTACTTATGCTGCCAATCCAAAATTCAGTGGCAATTCCAGTCTGTCATATGTCATTGATCTCAGGGAAGTCTTGCCGGAATTTGTTAGGATTGGTTTCTCCGCGGCAACCGGTAGCTGGATTGAAATACACAACATTCTATCTTGGTCATTCAATTCAACCTTGGATTCCAGCAAGGGGAAAAGCAAGGTTGGTTTGGGAATCGGCTTGAGTGTTGGATTTGTGTCTCTATCATCCGTAATAGGTGGTGTTTGTTTTGTATTTTGGAGGAAGAAAAGAAACCGAGCTGCCGGAGACGAGGACGATACAGGGTTCGACGCTTCTATAGAAGACGAATTCGAAAGAGGAACCGGTCCAAAGCGGTTCACTCACAAGGAGCTAAGCCAAGCAACAAACGGGTTCGCAGAAGAAGGAAAACTTGGAGAAGGAGGATTTGGAGGTGTGTACAAAGGAGCAGTAGGGAATCCAAGAATGGAAGTTGCTGTTAAGAGAGTTTCGAAAGGATCAAAGCAGGGGAAAAAGGAGTATATATCAGAAGTAAGAGTAATAAGCAGGCTGAGGCACAGGAATTTGGTGCAACTCATAGGGTGGTGCCACGAGAAAGGTGAGTTTCTTCTTGTTTATGAGTACATGCCTAATGGAAGCCTTGACTCGCACTTGTTTGGTAAAGGAGTCATGCTTTCTTGGGCTGTAAGGTACAAGGTTGCATTGGGTTTGGCATCTGCACTTGTTTATCTTCATGAAGAATGGGAACAATGTGTGGTCCATAGAGATATTAAGTCAAGTAATGTGATGCTAGATGCAAATTTCAATGCGAAACTCGGCGATTTCGGTCTAGCGAGGTTGGTGGACCATGAACTGGGGACTCAGACCACGGTTCTGGCTGGCACCATGGGGTACCTAGCTCCGGAGTGTGTGACCACTGGGAAATCAAGTAAGGAATCTGATGTGTATAGTTTTGGCGTGGTGGTGCTTGAAATAGCTTGCGGGAGAAGGCCGGTGCAAGTTAAAGAAGAGGCTGGCAAAGTGAGGCTGATAGAGTGGGTGTGGAATCTGTATGGACAGGGGAAGCTTCTAGAAGGTGCTGATTGGAGGTTAGATTTGGAATTTGATATGAAGCAAATGGAGTGCTTGATGACGGTTGGATTGTGGTGTTGTCACCCTGATTATAGCATGAGGCCTTCAATAAGGCAAGTGATAAATGTGCTTAATTTTGAAGCTCCTTTGCCAACACTTCCGTCACAGTTACCTGTGCCTATGTACTTCGCACCTCCCATGGAGATGTGCAAATTCACCTACACTTCTTCTGGAACCACAGCCACGTCGTCTAAGGACTCCTCAAACTATTCATCAATGTCAGCAGGCTCCAGAAAATCTCTATTATAG 1986 0.4386 MFMIFTSLIVLFNTNTVESVSFNFDNFMPNLYLIKFEGDAFSSEQVLQLTKNRIDGPITKSVGRASFDQPVKLWDKGTRKLTDFTTHFSFIMKAVDPNKFGDGLSFFIAPFESTIPSNSTGGFLGLFSEDSAFNKTANQIVAVEFDSFMNEWDPSSNHVGINVNSIRSVTNVSWNGNMKNGSVANAWISYNSTTKNLSVFLTYAANPKFSGNSSLSYVIDLREVLPEFVRIGFSAATGSWIEIHNILSWSFNSTLDSSKGKSKVGLGIGLSVGFVSLSSVIGGVCFVFWRKKRNRAAGDEDDTGFDASIEDEFERGTGPKRFTHKELSQATNGFAEEGKLGEGGFGGVYKGAVGNPRMEVAVKRVSKGSKQGKKEYISEVRVISRLRHRNLVQLIGWCHEKGEFLLVYEYMPNGSLDSHLFGKGVMLSWAVRYKVALGLASALVYLHEEWEQCVVHRDIKSSNVMLDANFNAKLGDFGLARLVDHELGTQTTVLAGTMGYLAPECVTTGKSSKESDVYSFGVVVLEIACGRRPVQVKEEAGKVRLIEWVWNLYGQGKLLEGADWRLDLEFDMKQMECLMTVGLWCCHPDYSMRPSIRQVINVLNFEAPLPTLPSQLPVPMYFAPPMEMCKFTYTSSGTTATSSKDSSNYSSMSAGSRKSLL 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60450g00027 661 ProSitePatterns Legume lectins alpha-chain signature. 225 234 IPR000985 -
Stsc60450g00027 661 CDD lectin_legume_LecRK_Arcelin_ConA 20 255 IPR001220 GO:0030246
Stsc60450g00027 661 PANTHER - 45 613 - -
Stsc60450g00027 661 ProSitePatterns Legume lectins beta-chain signature. 141 147 IPR019825 -
Stsc60450g00027 661 Gene3D Phosphorylase Kinase; domain 1 319 410 - -
Stsc60450g00027 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Stsc60450g00027 661 MobiDBLite consensus disorder prediction 638 661 - -
Stsc60450g00027 661 Pfam Legume lectin domain 20 259 IPR001220 GO:0030246
Stsc60450g00027 661 Pfam Protein kinase domain 335 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60450g00027 661 Gene3D - 17 268 - -
Stsc60450g00027 661 FunFam Lectin-domain containing receptor kinase A4.3 411 623 - -
Stsc60450g00027 661 SUPERFAMILY Concanavalin A-like lectins/glucanases 18 255 IPR013320 -
Stsc60450g00027 661 ProSitePatterns Protein kinases ATP-binding region signature. 340 363 IPR017441 GO:0005524
Stsc60450g00027 661 ProSiteProfiles Protein kinase domain profile. 334 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60450g00027 661 CDD STKc_IRAK 348 604 - -
Stsc60450g00027 661 SMART serkin_6 334 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60450g00027 661 FunFam L-type lectin-domain containing receptor kinase IX.1 319 410 - -
Stsc60450g00027 661 Gene3D Transferase(Phosphotransferase) domain 1 411 624 - -
Stsc60450g00027 661 SUPERFAMILY Protein kinase-like (PK-like) 318 629 IPR011009 -
Stsc60450g00027 661 FunFam L-type lectin-domain containing receptor kinase IX.1 18 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60450g00027 Stsc-Chr60450 146661 148733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60450g00027 3 621 Receptor kinase-like Gene Family AT5G10530 51.956 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc60450g00027 Pkinase 7.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60450g00027 - - gmx:100791518 974.541