Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60450g00026 ATGGAGGAGGTTGTTGGTAAGAGGATGAGGAAACAAGGTTTCTTGTTGTGGTGGTTTGGAATGACTATGCAACTCTGCTTCTTCTTCTTCTTGTTGTTGCTTGGTGGTGCGTCCTCTTCTGAGATGACATCATTAAGCAGAAAAGGCATAAGGGGGAGCAACAGCTTGCAGGCACCACCATCTTCCAATTTTGCAGTGAAGCTTAATGATGAAAGCCAAGAGCAGTTGGTGGTTGACAATGGTATCGTTTCAGTGACTTTGTCAATACCAGAGGGCTATGTCCTTGCTATATCCTATAATGGAATTGAAAATGTACTCGAACCTCAAAACGAAGATCAAGATAGAGGGTACTTTGATGTTGTTTGGAATGAACCAGGAAAACCCAGTTCCTTTCAAAGAATCCACGGGACAAATTTTTCGGTTATAACCGCTGACGAGAATATGGTGGAGCTTTCATTTTTAAGGGCATGGACAGCTTCCATGGAGGGCTCCAGTGTCCCCATGAATATAGACATAAGGTACATTTTGCGAAGAGGCGATTCAGGATTTTATTCATACGCAATATTTGATCGGCCCGATGAGGGATTTCCAGCTGTGGAGGTTGATCAAATTAGATTTGTTTACAAGCTCCTCAAAGACAGCTTCAACTATATGGCTGTGTCTGATACAAGGCAAAGAATGATGCCATCTATGAGGGACAGAGAAACAGGACAAATCTTGGCTTACCCTGAAGCCGTTCTCTTAACCAAACCAACTAACCCTCAATTCAGAGGAGAGGTGGATGACAAATACCAATACTCATGTGAGAACAGTGAAAACAATGTTCATGGATGGATTAGCCTTCAGTCTGATCAACCCGTGGGTTTCTGGATGATTACTCCTTCCAATGAGTTCCGCAATGGTGGTCCCATCAAGCAGGACCTCACTTCTCACGTTGGCCCCTTCACTCTCTCCATGTTTGTCAGCACTCACTATGCTGGCAAAGAAGTCACCATGTCCTTTCAGCAAGGAGAGACTTATAAAAAGGTTTTTGGACCTGTTTTTCTCTACCTAAACTCTGCTTCATCCTCCAATGATGATCCTTTATCTCTCTGGTCAGATGCTATGCACCAGCTCTCCAAGGAAGTCAAAGCATGGCCTTATAATTTTCCACAATCACCAGATTACTTTCCACCCGATCAACGAGGAACAGTGTTAGGAAGATTGTTAGTCCAAGATTGGTGCGTTAAGGGAGGTAGATTACAGTATGGTAACAATGCTTATGTTGGGCTGGCATTACCTGGTGATGCAGGATCATGGCAGAAAGAGAGCAAGGGCTATCAATTTTGGACTCTAGCTGACCCCAAGGGTTACTTTGCAATTAAAAATGTTGTACCCGGGGATTACAACTTGTATGCTTGGGTACCTGGCTTTATTGGTGATTACCGATATAATTCTACAATCACCATCACCCCAGGAGGAGTCATCAAATTGGATAAAGTTATATATAATCCTCCTAGAAATGGACCAACACTATGGGAAATTGGTATCCCAGACAGAAGAGCTGCAGAGTTCTACGTACCAGATCCTTACCCTACTCTCATGAACAGATTATACAATGAAAAACACAGTGACAAGTTTAGGCAATACGGGTTGTGGGAACGTTATTCTGATATGTACCCAAATGATGATCTTGTTTACACTGTTGGTGTCAACGAGTACAAGAAGGATTGGTTTTATGCCCATGTTACAAGGAATATGGGGAATAGGACATACGCTGCAACAACGTGGCAAATTATATTTGAACATAGCAATGACATAATGGAAGGAAACTACACGCTACAATTAGCCCTTGCATCTGCTGCTGATGCAGAACTTCAGGTTCGGTTCAATGAGCCAAGTGTATACCCTGCACACTTTGGAACAGGGGCAATAGGAGGAGACAATGCCATAGCAAGACACGGAATCCATGGATTGCATAGGCTATATAGTGTTGATGTGCCTAGTCATCATTTTGTCAAAGGGAAGAATATCATTTATCTGAGGCAGTCTAGAGCTGTAAACCAATTTCAAGGAGTTATGTATGATTATATCCGTTTAGAAAGACCACCAAACCCAACCACTTGA 2106 0.4274 MEEVVGKRMRKQGFLLWWFGMTMQLCFFFFLLLLGGASSSEMTSLSRKGIRGSNSLQAPPSSNFAVKLNDESQEQLVVDNGIVSVTLSIPEGYVLAISYNGIENVLEPQNEDQDRGYFDVVWNEPGKPSSFQRIHGTNFSVITADENMVELSFLRAWTASMEGSSVPMNIDIRYILRRGDSGFYSYAIFDRPDEGFPAVEVDQIRFVYKLLKDSFNYMAVSDTRQRMMPSMRDRETGQILAYPEAVLLTKPTNPQFRGEVDDKYQYSCENSENNVHGWISLQSDQPVGFWMITPSNEFRNGGPIKQDLTSHVGPFTLSMFVSTHYAGKEVTMSFQQGETYKKVFGPVFLYLNSASSSNDDPLSLWSDAMHQLSKEVKAWPYNFPQSPDYFPPDQRGTVLGRLLVQDWCVKGGRLQYGNNAYVGLALPGDAGSWQKESKGYQFWTLADPKGYFAIKNVVPGDYNLYAWVPGFIGDYRYNSTITITPGGVIKLDKVIYNPPRNGPTLWEIGIPDRRAAEFYVPDPYPTLMNRLYNEKHSDKFRQYGLWERYSDMYPNDDLVYTVGVNEYKKDWFYAHVTRNMGNRTYAATTWQIIFEHSNDIMEGNYTLQLALASAADAELQVRFNEPSVYPAHFGTGAIGGDNAIARHGIHGLHRLYSVDVPSHHFVKGKNIIYLRQSRAVNQFQGVMYDYIRLERPPNPTT 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60450g00026 701 CDD RGL4_C 506 694 - -
Stsc60450g00026 701 Pfam Rhamnogalacturonate lyase family 63 260 IPR010325 -
Stsc60450g00026 701 SUPERFAMILY Galactose-binding domain-like 501 694 IPR008979 -
Stsc60450g00026 701 Pfam Polysaccharide lyase family 4, domain II 418 490 IPR029413 -
Stsc60450g00026 701 Gene3D - 502 694 - -
Stsc60450g00026 701 Gene3D - 391 492 - -
Stsc60450g00026 701 FunFam Rhamnogalacturonate lyase B 391 491 - -
Stsc60450g00026 701 Gene3D - 65 372 IPR014718 GO:0030246
Stsc60450g00026 701 CDD RGL4_N 75 360 - -
Stsc60450g00026 701 SUPERFAMILY Starch-binding domain-like 389 493 IPR013784 GO:0030246
Stsc60450g00026 701 Pfam Polysaccharide lyase family 4, domain III 504 693 IPR029411 -
Stsc60450g00026 701 SUPERFAMILY Galactose mutarotase-like 71 359 IPR011013 GO:0003824|GO:0005975|GO:0030246
Stsc60450g00026 701 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 67 697 - -
Stsc60450g00026 701 CDD RGL4_M 394 491 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60450g00026 Stsc-Chr60450 136831 141964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60450g00026 76 698 Polysaccharide Lyase AT1G09910 56.160 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60450g00026 K18195 - gmx:100776664 1078.16