Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60450g00024 ATGTCTCAAGGTTTATTATTAGCAGAAGAAAAGGAAGCAACGCGTGCCTATGGATGGGCTGCAACAGATTCTTCGGGAATTCTCACCCCTTTTCATTTCACCAGGCGGGCAAATGGTGATAGAGATATCAGCATCAAGATACTCTACTGCGGGATTTGCCACTCCGATCTTCATATGCTCAAGAATGACCATGCCATAAGCATCTATCCCTTAGTCCCCGGCCATGAGATTGTGGGGCAAGTAACCAAGGTGGGAAGACAAGTTACAAAATTCAAGGTTGGTGACGTGGCTGGTGTGGGTGGCATTGTGGGCACGTGCGGCACGTGTTCCAACTGCACCCACGACTTGGAAACTTACTGCCCCAAAATGATTCTAACCTCAAGCTCACACTACCATGATGGATCAATAACCTATGGAGGATACTCTGATCATATTGTTGTTGATGAGCACTTTGCCGTCACTATTCCTAAATCTATGTCTCTGCATGGGACACCCCCTTTGTTGTGTGCTGGAATCACAGTTTACAGCCCCATGTTGTACCATGGGCTCTGCAGGCCCGGTCAGCACTTGGGTGTGGTGGGCCTTGGTGGGCTCGGACATCTGGCTGTTAAGTTTGCTAAGGCTTTTGGTATGAAGGTTACTGTCATAAGCACTTCTTCCCGGAAGAAGAAGGAAGCAATTCAACGTCTTGGTGTGGATGCCTTCTTACTTAGTCATCATCAACAACAATTGCAGGATGCCATGGGAACAATGGATGGGATCATCGACACAGTTTCAGCACCTCATGCTGTGTATCCTTTAGTTGGTTTATTGAAGACAGGTGGCAATTTGATATTGGTGGGTGCACCTGCTGCCTCATCTCCTGAATTACCATCTCTGCCTCTGATTATGGGGAGGAAGTCAATAAGTGGAAGTGCAGGTGGAGGAATGAGAGAGACACAAGAGATGATTGAGTTTGCAGCAAAGCACAATATTAGTGCAGATGTGGAAGTTATTCCCATGGATTATGTGAACACTGCCATGGATAGACTTGTCAACAATGATGTTCAATATCGATTCGTCATTGATGTAGCAAATACTTTGAAGAAACCACTAAGTTATTAA 1104 0.4583 MSQGLLLAEEKEATRAYGWAATDSSGILTPFHFTRRANGDRDISIKILYCGICHSDLHMLKNDHAISIYPLVPGHEIVGQVTKVGRQVTKFKVGDVAGVGGIVGTCGTCSNCTHDLETYCPKMILTSSSHYHDGSITYGGYSDHIVVDEHFAVTIPKSMSLHGTPPLLCAGITVYSPMLYHGLCRPGQHLGVVGLGGLGHLAVKFAKAFGMKVTVISTSSRKKKEAIQRLGVDAFLLSHHQQQLQDAMGTMDGIIDTVSAPHAVYPLVGLLKTGGNLILVGAPAASSPELPSLPLIMGRKSISGSAGGGMRETQEMIEFAAKHNISADVEVIPMDYVNTAMDRLVNNDVQYRFVIDVANTLKKPLSY 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60450g00024 367 FunFam Putative cinnamyl alcohol dehydrogenase 6 328 357 - -
Stsc60450g00024 367 Pfam Zinc-binding dehydrogenase 197 321 IPR013149 -
Stsc60450g00024 367 CDD CAD1 18 356 IPR047109 GO:0016616
Stsc60450g00024 367 PANTHER ALDEHYDE REDUCTASE 10 360 IPR047109 GO:0016616
Stsc60450g00024 367 SMART PKS_ER_names_mod 26 355 IPR020843 GO:0016491
Stsc60450g00024 367 FunFam probable cinnamyl alcohol dehydrogenase 19 179 - -
Stsc60450g00024 367 FunFam Cinnamyl alcohol dehydrogenase 170 327 - -
Stsc60450g00024 367 Gene3D - 19 357 - -
Stsc60450g00024 367 Pfam Alcohol dehydrogenase GroES-like domain 41 154 IPR013154 -
Stsc60450g00024 367 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Stsc60450g00024 367 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 325 IPR036291 -
Stsc60450g00024 367 SUPERFAMILY GroES-like 23 188 IPR011032 -
Stsc60450g00024 367 Gene3D - 170 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60450g00024 Stsc-Chr60450 132871 134211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60450g00024 15 362 Monolignol Biosynthesis Gene Families AT4G37990 63.506 3.60e-150 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60450g00024 K23232 - qlo:115967174 501.516