Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60450g00017 ATGCAAGAGTTTAGGGGTAAGTTGCAGAAGGTGATAAAGAAAGCGAATCCAGAGATAGATTGGGGGGTATTATATAACTACAACTACTACAACAACAAAAAGGAGCTTCCATCTAGATCAGCTTGTTCCGATGAATTCCCATCGCCTCGGGGGATGTTCGACGCTATGTCCACTGCTGACTCCGACTACAGCTCCCGGGGGAGCAGCAACAACAACAGCACCCTACCCTCCTCCCCCTCCACGGCTTCGGGTTTGCCAAAGCCCAACTCCACCAACAAGGTGGACCAGCAGCAGCAGTGGAGGGCAATGATAGAGGCCCTCAGGTTCAAGAACGTTAGAAGATTCTCCAACATTCCATTGCTGGCCGCTAGCTACGAGATCTCTAGGAAGAACCTAAGGAAGAAGGTGGCTCGCAAGACCAACGGCGAAGACGATGACGATCTTCCCATAGATCTTGATAGCATCCCAACCAAGCCTTCTTGGCGAAATTTCCCTTACGCTGATCTGGCTGCTGCCACCGATAATTTCTCCCCGGAGAACATGCTTGGGAAAGGCGGTCATGCTGAGGTGTACAGAGGACGCTTACCGGACGGTCAAATCGTAGCAGTGAAGAGGCTGATGAATAATGGGAAGGAGATTGAGGACCAAGTTGGTGATTTCTTGTCAGAACTTGGAATCATTGCTCACATAAACCACCCGAATGCAACACACCTTCTTGGATTTGGCATTGACAATGGGCTCTACTTTGTCCTCCGTTACGCTCCTCGTGGCAGCATCGCTTCTTTGCTGTTTGGTTCTCAATGCTTGGAGTGGAAGGCAAGGTTCAAGCTAGCTCTTGGGGTCGCCAAAGGATTGAAGTACCTTCATCATGATTGTCCTAGAAGAATCATTCACAGAGACATCAAAGCCTCTAACATATTACTCGACGATAACTATGAAGCTGAGATTTCGGATTTCGGATTGGCAAAGTGGCTTCCAGATCAGTGGGAACATCATGTTGTGTTCCCAATTGAAGGCACATTCGGATATTTGGCTCCAGAGTACTTTATGCACGGACTTGTGGATGAGAAGACTGATGTATTTGCATTTGGGGTTTTGTTACTGGAGCTCCTAACTGGTCGCCGCGCCGTCGATTCAAACAGCAGGGAGAGTCTTGTGATCCGGGCAAAACCACTGTTGGATTCAAAGCAGATTGAGGAAATAGTAGATCCAAAATTAGGAGATCAGTATGATCTTACAGAAATGAACAATGCCATGGCAACGGCTTCTCTGTGTGTCCACCACAAACCCTCCATGCGCCCATACATGAACATGGTCGTGAAGCTGCTCAAGGGAGATGAGGTAACAGCTGATGAGATCACTCAAAGATCAATATCCACAAAATCACTATTATTAGATGCATGTGACCTTGAAGATTATACTTGCTCTAATTACTTGAACGATATTAATCGCCACAAGCAATTACTAATGGAGTGA 1476 0.4715 MQEFRGKLQKVIKKANPEIDWGVLYNYNYYNNKKELPSRSACSDEFPSPRGMFDAMSTADSDYSSRGSSNNNSTLPSSPSTASGLPKPNSTNKVDQQQQWRAMIEALRFKNVRRFSNIPLLAASYEISRKNLRKKVARKTNGEDDDDLPIDLDSIPTKPSWRNFPYADLAAATDNFSPENMLGKGGHAEVYRGRLPDGQIVAVKRLMNNGKEIEDQVGDFLSELGIIAHINHPNATHLLGFGIDNGLYFVLRYAPRGSIASLLFGSQCLEWKARFKLALGVAKGLKYLHHDCPRRIIHRDIKASNILLDDNYEAEISDFGLAKWLPDQWEHHVVFPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLELLTGRRAVDSNSRESLVIRAKPLLDSKQIEEIVDPKLGDQYDLTEMNNAMATASLCVHHKPSMRPYMNMVVKLLKGDEVTADEITQRSISTKSLLLDACDLEDYTCSNYLNDINRHKQLLME 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60450g00017 491 Gene3D Phosphorylase Kinase; domain 1 150 253 - -
Stsc60450g00017 491 MobiDBLite consensus disorder prediction 53 97 - -
Stsc60450g00017 491 ProSitePatterns Protein kinases ATP-binding region signature. 182 204 IPR017441 GO:0005524
Stsc60450g00017 491 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 151 253 - -
Stsc60450g00017 491 ProSiteProfiles Protein kinase domain profile. 176 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60450g00017 491 Gene3D Transferase(Phosphotransferase) domain 1 255 464 - -
Stsc60450g00017 491 PANTHER OS08G0249100 PROTEIN 47 470 IPR046958 -
Stsc60450g00017 491 SUPERFAMILY Protein kinase-like (PK-like) 161 457 IPR011009 -
Stsc60450g00017 491 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 255 457 - -
Stsc60450g00017 491 Pfam Protein kinase domain 179 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60450g00017 491 SMART serkin_6 176 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60450g00017 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Stsc60450g00017 491 MobiDBLite consensus disorder prediction 58 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60450g00017 Stsc-Chr60450 77010 78983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60450g00017 162 482 Receptor kinase-like Gene Family AT5G16000 40.964 1.78e-67 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc60450g00017 Pkinase 1.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60450g00017 - - gmx:100794225 632.869