Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60450g00015 ATGGAAATGCCCACCGCCTCCTCCATCTACAACCACACACTACCTTCTCCTTCTTCTCATTACAGCAACTTCCTCTATGCCAACGGGATCACTGAAGACGGTTTCATGCCCCAACAACAACATATTTCCCCCATCATTCCCGCCCTCCCCAAGCTCGAACCATTTTCCCAAACCGACACTAGAAATGATCACCATCAACGCGCCTTCGTTCCTGCTGATGCACCTTTCTCCTCTACCAACTCCAAGAAAGCCGTTGGGGATACATTTGGCCACCGAACTTCAATATACAGAGGTGTTACCAGACACCGATGGACAGGACGATATGAAGCTCACCTATGGGATAATAGCTGCCGTCGAGAGGGTCAAACCAGGAAAGGCCGTCAAGTATATTTGGGTGGATATGACAAGGAAGAAAAGGCCGCAAGAGCCTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACAGCTACCACTAACTTCCCTGCTTCCAATTACACCAAGGAATTGGAAGAGATGAAAGATGTGGGGAAGCTTGAATTTATTGCATCACTGCGAAGGAGAAGTAGTGGTTTCTCTAGGGGAGCTTCCATATACAGGGGTGTTACAAGGCATCATCAACAAGGTAGATGGCAAGCGAGAATAGGCCGGGTGGCAGGGAACAAAGATCTATACCTGGGAACATTTGCAACTGAAGAGGAAGCGGCAGAGGCATACGATATTGCGGCCATAAAGTTCAGAGGGTTAAATGCAGTAACCAATTTTGAGATGAGTAGGTACAACGTGGAAGCCATCATGAATAATTCCCTTCCCATTGGCAGGGCAGCGAAGCGTTTGAAGCTTTCCCTAGAATCAGAGAAGGAAGAAGCTGCTACTACTTGTCATACTCACCCACCTAAGAATGAGAGTATATCAACCATGCAGGTTCAGCCACTGCCACCTCCTACACCGTTTGATTCTGTAACACCATATTACCACCAATTTTATCCCACCGATGCCCTTAATGGCACGACGAAATCAGCTATGGCCAGTGTAACTGCAGCTTCAGCATCAACTGAGTTCTATATGTGGCCTCATCAGTGCTATTAA 1086 0.4751 MEMPTASSIYNHTLPSPSSHYSNFLYANGITEDGFMPQQQHISPIIPALPKLEPFSQTDTRNDHHQRAFVPADAPFSSTNSKKAVGDTFGHRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPASNYTKELEEMKDVGKLEFIASLRRRSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYNVEAIMNNSLPIGRAAKRLKLSLESEKEEAATTCHTHPPKNESISTMQVQPLPPPTPFDSVTPYYHQFYPTDALNGTTKSAMASVTAASASTEFYMWPHQCY 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60450g00015 361 CDD AP2 196 257 IPR001471 GO:0003700|GO:0006355
Stsc60450g00015 361 ProSiteProfiles AP2/ERF domain profile. 95 161 IPR001471 GO:0003700|GO:0006355
Stsc60450g00015 361 SUPERFAMILY DNA-binding domain 94 163 IPR016177 GO:0003677
Stsc60450g00015 361 FunFam AP2-like ethylene-responsive transcription factor ANT 94 163 - -
Stsc60450g00015 361 Pfam AP2 domain 95 153 IPR001471 GO:0003700|GO:0006355
Stsc60450g00015 361 Pfam AP2 domain 197 247 IPR001471 GO:0003700|GO:0006355
Stsc60450g00015 361 FunFam AP2-like ethylene-responsive transcription factor 196 257 - -
Stsc60450g00015 361 ProSiteProfiles AP2/ERF domain profile. 197 255 IPR001471 GO:0003700|GO:0006355
Stsc60450g00015 361 SUPERFAMILY DNA-binding domain 196 257 IPR016177 GO:0003677
Stsc60450g00015 361 CDD AP2 94 163 IPR001471 GO:0003700|GO:0006355
Stsc60450g00015 361 Gene3D AP2/ERF domain 197 257 IPR036955 GO:0003700|GO:0006355
Stsc60450g00015 361 Gene3D AP2/ERF domain 95 163 IPR036955 GO:0003700|GO:0006355
Stsc60450g00015 361 PRINTS Ethylene responsive element binding protein signature 237 257 IPR001471 GO:0003700|GO:0006355
Stsc60450g00015 361 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Stsc60450g00015 361 SMART rav1_2 95 167 IPR001471 GO:0003700|GO:0006355
Stsc60450g00015 361 SMART rav1_2 197 261 IPR001471 GO:0003700|GO:0006355
Stsc60450g00015 361 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 47 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60450g00015 Stsc-Chr60450 72420 75567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60450g00015 77 361 AP2-EREBP Transcription Factor Family AT5G65510 66.667 9.98e-122 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc60450g00015 AP2 2.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60450g00015 K09285 - gmx:100777168 392.504