Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60450g00003 ATGGAAGATGAGAACTTTGACCCTGCAACCTCAAGCCTTCTGTGTCTGGAAAACAATAACACATGCTTTGATGATTTTGAATGTAGTGCCGCAGATGGGTACCACAAAAAACTTAACTTTAACAACGATCATGGATCGGAACCATTCGTGGGTTTTCTGGTGCTGACTGATGAAACTTTTGGGGTTATGGTTGAGAAGGAGAGGGAGTTTTTGCCCTCTGCTGATTACCTCAGGAGGATCCTTGCTGGGGATTTAGACTTTCTTGTTAGAAGGGACGCTCTTGATTGGATTTGTAAGGTTCATGCTTATTATGGTTTTGGAACCAGTTGCTTTTGTCTATCTGTGAACTACTTGGATCGGTTCCTATCAGCTCGTGATATACCAAGGGACAAAAATTGGGCTGTGCGGTTGTTAGCTGTAGCTTGTTTATCAATTGCAGCTAAGATGGAGGAGACTAAAATACCACCCCATATTATAGATATGCAGGTTGACCAAACAACACTAGTGTTTGATGCTAAAACTATTCAAAGAATGGAACTGATGATATTAAGCACATTGAGATGGAAAATGCAAGCTTTAACTCCATGTTCCTATATGGACTACTTCCTTGGCAAGATCACCTGTGAGCAGCATCCGGCAAAGACATTGGTTTTGAGATCAATGGAGTTGATCATTCAAACTATCAGATGTGTTGAATTCTTGGAGTTTCGGCCTTCTGAAATTGCCGCAGCAGTTGCGATTTCTGTTTCAAGGGAATCACAAGGAATAGAGATTGATAAAGCCTTGAATTGTTTTGCCATCGCGGAGAAGGACAGAGTCTTGAAGTGCGTTGAACTGATCAGAGACTTGGCCTTGATCAAAGTTTCGGCTAATTTGAACGGCAACTTAGCTCCATTAGCGCCGCAAAGCCCCCTCGGGGTGCTCGATGCGACATGCTTGAGCTATAGAAGTGATGAATCAACAACAGTTGGTTCATATTATAGTCCAAGTGCTAAGAGGTGTAGATCAGATAATGGACCTTCTAATGAGAATTTCAAGTCATGA 1044 0.4215 MEDENFDPATSSLLCLENNNTCFDDFECSAADGYHKKLNFNNDHGSEPFVGFLVLTDETFGVMVEKEREFLPSADYLRRILAGDLDFLVRRDALDWICKVHAYYGFGTSCFCLSVNYLDRFLSARDIPRDKNWAVRLLAVACLSIAAKMEETKIPPHIIDMQVDQTTLVFDAKTIQRMELMILSTLRWKMQALTPCSYMDYFLGKITCEQHPAKTLVLRSMELIIQTIRCVEFLEFRPSEIAAAVAISVSRESQGIEIDKALNCFAIAEKDRVLKCVELIRDLALIKVSANLNGNLAPLAPQSPLGVLDATCLSYRSDESTTVGSYYSPSAKRCRSDNGPSNENFKS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60450g00003 347 PANTHER CYCLINS 57 282 IPR039361 -
Stsc60450g00003 347 SMART Cyclin_C_2 193 329 IPR004367 -
Stsc60450g00003 347 Gene3D - 63 279 - -
Stsc60450g00003 347 FunFam D6-type cyclin 73 186 - -
Stsc60450g00003 347 CDD CYCLIN_AtCycD-like_rpt2 194 280 - -
Stsc60450g00003 347 SMART cyclin_7 95 184 IPR013763 -
Stsc60450g00003 347 Gene3D - 73 191 - -
Stsc60450g00003 347 Pfam Cyclin, C-terminal domain 194 284 IPR004367 -
Stsc60450g00003 347 Pfam Cyclin, N-terminal domain 60 190 IPR006671 -
Stsc60450g00003 347 ProSitePatterns Cyclins signature. 90 121 IPR006671 -
Stsc60450g00003 347 FunFam D6-type cyclin 187 278 - -
Stsc60450g00003 347 SUPERFAMILY Cyclin-like 53 190 IPR036915 -
Stsc60450g00003 347 CDD CYCLIN_AtCycD-like_rpt1 89 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60450g00003 Stsc-Chr60450 8375 10720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60450g00003 34 321 Core Cell Cycle Gene Families AT2G22490 48.161 2.74e-83 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60450g00003 K18810 - gmx:100800570 380.948