Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60448g00012 ATGCAGCCTTGTAGCAAGGAAATGCAAAGCCTCAACTCTCTCTTCACTACTCAGCAGCAGCAGCAACAGATCCAAATGAACAACCCCCATCATTTGGACCCTACCACTTCTCAAGAAGATGATTTCCTCAAGCAAATGCTCTCTAACATCCCTCCACCGCCACCTCCTTCATGGACAACCCTTGACCACCATACCTCTAACCCTAACAAGTCTTCTTACTGGCCAGACTCCAATGATCACACCAATGTCGCTTTCCCTAACTATGATGACCCTGCCACTCTCGCTTCCAAGTTCCGCAACCATCAAATTACCGCAAACTCCTCCTCCAAGGCTGCTGCTCTCTTGCTCCACCAGCAGCTTCTCATGACTAGAGGACTCGGACTCTCCGGTGCCGATTCCGCCATCCTGAGCCACATGTTTGATTCCTCTCAAAACGACGTCGTTGTTGAAGCCTCTTCCTCTCCCTTCAAATCTCCCAATCCAGTTCAGGCTGCTGACGCTTCAGTTCAGGCTCTGTATGATGGTTTTGCCGGATCTCTCCAGGGCGCTGCTCTGCCTTCTTCCAATCAGACTCGGACTCACCATTTTCAGCATCCACAGGGTCAAGGAGGTTCAAATCCGAATCCGATGCAGGGGCAGGGTGGGAACACGAACTCCGGTCAGCCGAAACAGAGGGTTAGAGCGAGGAGAGGTCAAGCCACTGACCCACACAGCATTGCTGAGAGGTTGCGAAGGGAAAGGATTGCTGAGAGAATGAAAGCTTTGCAGGAATTGGTTCCCAATGCCAACAAGACAGACAAGGCCTCTATGCTGGATGAGATAATCGACTATGTGAAGTTCCTCCAGCTCCAAGTCAAGGTTCTTAGCATGAGCAGATTGGGAGGTGCAGCTGCTGTAGCCCCGCTTGTTGCTGATATAAACTCTGAGGGAGGCGGTGACTGCGTCCAAACAAATGCCAACCAAACGGCGGCAGCAGCAGCGGCCTCATCCTCCAACGACAGCCTCACCATGACGGAGCAGCAGGTGGCTAAGCTCATGGAGGAGGACATGGGCTCCGCCATGCAGTACCTCCAAGGGAAAGGCCTCTGCCTCATGCCAATCTCTCTAGCCACCGCCATCTCCACTGCCACCGCCACGTGTCACCCCAGGAACCCCATCATCAACCCCGTTGATGGACCCTCCTCTCCTGGCATGTCAGTGCTCACCGTGCAGTCTGCTAACGGTGACGCCGTCAAGGACGCCACCTCCGTTTCCAAGCCATAA 1263 0.5368 MQPCSKEMQSLNSLFTTQQQQQQIQMNNPHHLDPTTSQEDDFLKQMLSNIPPPPPPSWTTLDHHTSNPNKSSYWPDSNDHTNVAFPNYDDPATLASKFRNHQITANSSSKAAALLLHQQLLMTRGLGLSGADSAILSHMFDSSQNDVVVEASSSPFKSPNPVQAADASVQALYDGFAGSLQGAALPSSNQTRTHHFQHPQGQGGSNPNPMQGQGGNTNSGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADINSEGGGDCVQTNANQTAAAAAASSSNDSLTMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATATCHPRNPIINPVDGPSSPGMSVLTVQSANGDAVKDATSVSKP 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60448g00012 420 MobiDBLite consensus disorder prediction 60 78 - -
Stsc60448g00012 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 292 IPR036638 GO:0046983
Stsc60448g00012 420 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 93 373 - -
Stsc60448g00012 420 MobiDBLite consensus disorder prediction 183 242 - -
Stsc60448g00012 420 Gene3D - 227 289 IPR036638 GO:0046983
Stsc60448g00012 420 MobiDBLite consensus disorder prediction 1 44 - -
Stsc60448g00012 420 Pfam Helix-loop-helix DNA-binding domain 237 282 IPR011598 GO:0046983
Stsc60448g00012 420 MobiDBLite consensus disorder prediction 1 78 - -
Stsc60448g00012 420 MobiDBLite consensus disorder prediction 183 225 - -
Stsc60448g00012 420 MobiDBLite consensus disorder prediction 228 242 - -
Stsc60448g00012 420 FunFam Transcription factor bHLH66 229 294 - -
Stsc60448g00012 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 232 281 IPR011598 GO:0046983
Stsc60448g00012 420 SMART finulus 238 287 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60448g00012 Stsc-Chr60448 77199 80408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60448g00012 221 419 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 65.919 6.47e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60448g00012 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60448g00012 - - cave:132185902 405.216