LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60448g00007	ATGGGAGAGAGAGGGAGTGAGCGTGAGGGTTCGTCTACGACGCTGCTGCAGGGGAAGTATGAGTTAGGGAGGCTTCTTGGAACGGGAACATTCGCGAAGGTGTACCACGCGCGGAACGTGGAAACTGGCAAGAGCGTCGCCATGAAGGTGGTTGGGAAAGAGAAGGTGATAAAGGTTGGGATGATGGAGCAGATCAAGAGAGAGATCTCCGTCATGAAGATGGTGAACCATCCACACATCGTTGCGCTTCACGAAGTAATGGCTTCCAAATCCAAGATCTACATCGCCATGGAGCTCGTTCGCGGCGGTGAGCTTTTCAACAAGATCGCCACGAGAGGACGCATGAGGGAGGACCTTGCCAGGCTCTACTTCCACCAGCTCATCTCCGCCGTCGACTTCTGCCACAGCCGCGGCGTCTACCACCGCGATCTCAAGCCGGAGAATCTCCTCCTTGACCACAACGGCAACCTCAAGGTCTCTGACTTCGGACTCAGCACTTTCTCCGAGCACCTCCGCCAGGACGGCTTGCTGCACACAACTTGCGGCACTCCGGCTTATGTCTCGCCGGAGGTGCTCGCGCGGAAGGGATACGACGGCGCTAAGGCCGATATATGGTCCTGCGGCGTCATCATGTTCGTTCTTCTTGCAGGTTGCTTGCCGTTTCAGGACGATAACCTTGTTGCGATGTACAAGAAGATTTACAGAGGAGATTTCAAGTGTCCGCCGTGGTTTTCCGGCGACGCAAGGAGGCTAATCACGAAGCTGCTCGATCCGAATCCGAATACTCGCATCACCATATCAAAAATCATGGAGTCGCCATGGTTCAAGAAGCCTGTTCCGAAGAACATGCTGCGGGGGATGATGAATGAGGAAGACGAAGAGGAGAAGGAGAAAGAGAAAGAGGAGAAGATGAAGCAGCCATCGACGATGAACGCATTTCACATCATATCGTTATCGGAAGGGTTTGATTTGTCGAGGTTGTTCGAGGAGAAGAAGCGAGAGGAGAGGGAGGAGATGAGGTTTGCGACGGCGGGGACGGCGAGCAGTGTGATATCTCGGCTGGAGGAGGTGGCGAAGGCGGTGAAGTTCGACGTGAAGAGAAGCAGCGATGAGACGAAGGTGAGGCTGCAGGGGCAGCAGAGAGGGAGGAAGGGGAAGCTGGCAATTGCGGCGGATATATACGCCGTGACGCCGTCTTTTCTGGTGGTGGAGGTGAAGAAGGACAACGGTGACACCTTGGAGTATAACCAGTTCTGCAGCAAGGAGCTTCGCCCTGCACTCAAGGATATCTTCTGGACTTCACCACCTGAGAACACCACACCCGCTTAA	1329	0.547	MGERGSEREGSSTTLLQGKYELGRLLGTGTFAKVYHARNVETGKSVAMKVVGKEKVIKVGMMEQIKREISVMKMVNHPHIVALHEVMASKSKIYIAMELVRGGELFNKIATRGRMREDLARLYFHQLISAVDFCHSRGVYHRDLKPENLLLDHNGNLKVSDFGLSTFSEHLRQDGLLHTTCGTPAYVSPEVLARKGYDGAKADIWSCGVIMFVLLAGCLPFQDDNLVAMYKKIYRGDFKCPPWFSGDARRLITKLLDPNPNTRITISKIMESPWFKKPVPKNMLRGMMNEEDEEEKEKEKEEKMKQPSTMNAFHIISLSEGFDLSRLFEEKKREEREEMRFATAGTASSVISRLEEVAKAVKFDVKRSSDETKVRLQGQQRGRKGKLAIAADIYAVTPSFLVVEVKKDNGDTLEYNQFCSKELRPALKDIFWTSPPENTTPA	442

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc60448g00007	442	CDD	STKc_SnRK3	19	274	-	-
	Stsc60448g00007	442	SUPERFAMILY	Protein kinase-like (PK-like)	17	284	IPR011009	-
	Stsc60448g00007	442	Pfam	NAF domain	307	366	IPR004041	GO:0007165
	Stsc60448g00007	442	FunFam	Non-specific serine/threonine protein kinase	305	432	-	-
	Stsc60448g00007	442	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	139	151	IPR008271	GO:0004672\|GO:0006468
	Stsc60448g00007	442	FunFam	Non-specific serine/threonine protein kinase	10	306	-	-
	Stsc60448g00007	442	Coils	Coil	284	304	-	-
	Stsc60448g00007	442	CDD	CIPK_C	311	428	-	-
	Stsc60448g00007	442	Gene3D	Transferase(Phosphotransferase) domain 1	102	280	-	-
	Stsc60448g00007	442	Gene3D	Phosphorylase Kinase; domain 1	17	101	-	-
	Stsc60448g00007	442	ProSitePatterns	Protein kinases ATP-binding region signature.	26	53	IPR017441	GO:0005524
	Stsc60448g00007	442	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	10	429	-	-
	Stsc60448g00007	442	FunFam	Non-specific serine/threonine protein kinase	11	99	-	-
	Stsc60448g00007	442	Pfam	Protein kinase domain	20	275	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc60448g00007	442	Gene3D	Kinase associated domain 1, KA1	304	433	-	-
	Stsc60448g00007	442	SMART	serkin_6	20	275	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc60448g00007	442	ProSiteProfiles	NAF domain profile.	305	329	IPR018451	GO:0007165
	Stsc60448g00007	442	ProSiteProfiles	Protein kinase domain profile.	20	275	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60448g00007	Stsc-Chr60448	57873	59977	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60448g00007	3	436	CBL-interacting serine-threonine protein kinases	AT4G30960	73.767	0.0	624

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Stsc60448g00007		Pkinase	9e-74	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60448g00007	-		K07198	gmx:547644	688.337