Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60448g00005 ATGGCCATGCTCCGAAAATTGTTCTTTCGAAAACCTCCCGATGGCCTTCTCGAGATCTGTGAACGCGTCTACGTATTTGATTGCTGCTTCACCACTGATGCTTGGAGCGAAGAGAATTACAAAGTTTACATTGATGGAATAGTTGGTCATCTTAAGGAGAACGTGCCCGATGCTTCAATTCTTGTTTTCAATTTCCGCGAGGAAGAGACGAAGAGCGTTATGGCAAACATATTATCTGAGTATGACATTACTATTATGGACTATCCGCGCCACTATGAAGGTTGCCCTGTGCTCAAGATGGAGCTCATTCACCATTTCTTAAGGTCTGGTGAGAGTTGGCTCTCTCTTGGGCAGCACAATGTGCTTTTGATGCATTGTGAACGCGGTGGTTGGCCTGTTTTGGCCTTCATGCTAGCAGCATTATTGATTTATCGGAAGCTTTACACCGGGGAGGGACGGACTTTGGATATGGTGTATAAGCAGTCTCCCCGCGAGCTTTTGCATTTGCTGACACCCTTGAATCCAATCCCTTCGCAGCTGAGGTATCTGCAGTATGTTTCCAGAAGGAATGTGGCCATAGATTGGCCACCGTTGGACAGGGCTCTCATGTTGGATTGCATTATCCTTAGATTCATCCCGAATTTCGATGGACAAGGTGGTTGTCATCCCTTGTTTAGAATCTTTGGACAGGACCCTTCTAGTGGAGACAAGAATCCGAAAATGTTGTACTCAACTCCCAAGAGAAGCAAGAATATCCGGTCTTACAAGCAGGGAGAGTGTGAACTAGTTAAGATTGATATCAGTTGCCATATTCAAGGTGATGTAGTGATTGAGGGCATTAACTTGGACCGTGATATGGAGCAAGAAATGATGATGTTCCGAGTAATGTTCAACACGGCTTTTGTTAGATCTAATATCATGATGCTTAACCGGGATGAAGTTGACATTTTATGGGATGCTAAAGATCAATTTCCAAAGGATTTCAGAGCTGAGATCCTTTTCTCCGAAATGGATGCTGCTGCAGCTGTTATGGTGGATCGCACCTCATGCTTCGAGGAGAAGGAAGGACTGCCAGTGGAAGCATTTGCCAAGGTTCAAGAGATCTTTAACTATGTGGACTGGTTGGACACCGATGCAGATGCTGCACTAAATGTTCTCCAACAGATGACTGCTTCGGCTATCATTAACGACAAGTTGGATACAGTTCAAGAAGCATACCTTAAAATGCCTCGGGGGAAAATGAATGAAGCGATAGAGTATTCTCCAAGTAAGCAATCCCCGGACAATGAGAAGAGTAAAAAAGGAGATATGGCCAGTAAAGTTGATGCTATTCCACAGGCATCTGATATTTTCTGCTTGCCTGGTTCTGTGGATGCTTCCTTTTCCCCAGAAACACCTCCTCTACGGCATGCCTCAAATAGATTTGGCAAAGGATTTCATGATTCTCCTCCCCATACAGAAGTCAGTCATCAACCTGTTATTGATGAAACTGAAGCCCAATTGCAAGATAGAAGTCAGTCATCTATTTCTAGGTTTGCACCTGGGAGTCAATCTTCTTCTACCTCTTGTAGCAAGTCACCAACTGATACCATCACTCAGACTTCAAAGTCAGGCACTACTTCAGTTCAGCCACCCCCTGCACTTTCTCCCAGAACACCGTTGAAGGAAATTCGACCTGTAAAAGCAAGACCCGAGTCATCCTCTTCAAAACCGCCTACACCACCTCCTCCTCCTACTCCTCCTCCAAAGGATCATAAACCAGCTTCAGTTAAACCTCCTCCACCTCCACCACCTCCTTCAAAGAATGAACCAGATGTTAGAGATGGACCCTCTACTCCTCCACCACCTCCCTTAAAGGAAGAGCCACAGGTGAAAGCTGCACCCCCTCCTCCTCCTCCTCCTCCTCCTCCACCTCTTGCAAAGGATGATTCACAGGTTAGAGCTAGACCCCCTCCACCACCACCACCTCCTCCTTGTCTCTCTGCCAAAGCTGAAGGTCCTAGTACAGCATCAACAGCGCCGCCGCCACCACCGCCGCCGCCATCTGCAACACCTACCTCAAATATGCCTAATCCTTCTGTCCCAGCTGCTCCTCCACCTCCTTCTGCACCAGCTGCTCCACCACCTCCTTCTCCCTTAGGCAAAGGGGGTTCAAAATCAGGCCAAGGTTTTCTAGGATCTCTTTCTGCAGCTGGTGATGGATCTAGCTCAAAGGGACGGATGCTATCACGTACTATTAATTCAAAGAATAATGCCAAAAAGCTGAAGCCATTGCATTGGTTGAAACTGTCTAGGGCTGTGCAAGGAAGTTTGTGGGCTGAGACACAGAAATCGGGTGAAGCTTCCAAAGCCCCAGAGATTGACATGTCAGAGCTTGAGAGTCTCTTCTCAGCAGCAGTCCCAAGTTCAGGCTCAACCAAGAAATCAAATGCCCAAAGCGCAGCTGCTCCTAAATCTGATAAAGTGCAACTGATTGAGCATAGGCGAGCATACAATTGTGAAATCATGCTTTCAAAAGTGAAGGTGCCACTGCATGATTTAATGAGCTCAGTGCTAAAACTGGAAGAGTCAGCACTAGACATTGATCAGGTTGAGAATATCATAAAGTTTTGTCCTACAAAAGAAGAGATGGAACAACTTAAGGGTTATACAGGTGAAAAGGAGAAGTTAGGGAGGTGTGAACAGTTCTTCCTAGAGTTGATGCAAGTACCACGGGTAGAATCCAAGCTCAGAGTTTTTGCATTTAAGATTCAGTTCCAAAGTCAGGTTGCTGACCTTCGAAAAAACCTGAATGTTGTGAATGCTGCAGCAGATGAGATCAAAAGCTCTGTCAAATTTAAGAGAGTTATGCAAACCATACTTTCCCTGGGCAATGCTTTGAACCAGGGAACTGCCAGGGGCTCTGCCATTGGATTCAGATTGGATAGTCTTCTGAAGCTTACTGAAACACGTGCACGGAACAACAAGATGACTCTCATGCATTATCTTTGCAAGGTTCTGGCTGACAAACTACCAGATGTTTTAGACTTCTCCAAGGATCTTGCCAACCTAGAGCCAGCAGCAAAGATCCAATTGAAGATTCTGGCAGAGGAGATGCAGGCTATAAGCAAAGGATTAGAGAAAGTTGTGCAGGAATTATCACTGTCTGAAAATGATGGTCCAATGTCAGAAACTTTCCGCAAGAATTTGAAAGAGTTCCTCTCTCATGCTGAAGCTGAAGTCCGTTCATTGGCTTCATTATATTCTCGTGTGGGTAGGAATGTTGACACATTGATTCTTTATTTTGGGGAAGATCCATCAAGGTGCCCTTTTGAGCAAGTTGTCACGACTTTGCACAACTTCACTGGAATGTTCAACAAATCACATGAAGAAAACAGCAAGCAGCTAGAGCTTGAAATGAAGAAAACAGCCGACGGTGAGAAAAAGAAGTGCGAACGAGAAAAGATAATACCGGCAGCAATCCGGACCGGCAACGTCCAATGA 3483 0.4556 MAMLRKLFFRKPPDGLLEICERVYVFDCCFTTDAWSEENYKVYIDGIVGHLKENVPDASILVFNFREEETKSVMANILSEYDITIMDYPRHYEGCPVLKMELIHHFLRSGESWLSLGQHNVLLMHCERGGWPVLAFMLAALLIYRKLYTGEGRTLDMVYKQSPRELLHLLTPLNPIPSQLRYLQYVSRRNVAIDWPPLDRALMLDCIILRFIPNFDGQGGCHPLFRIFGQDPSSGDKNPKMLYSTPKRSKNIRSYKQGECELVKIDISCHIQGDVVIEGINLDRDMEQEMMMFRVMFNTAFVRSNIMMLNRDEVDILWDAKDQFPKDFRAEILFSEMDAAAAVMVDRTSCFEEKEGLPVEAFAKVQEIFNYVDWLDTDADAALNVLQQMTASAIINDKLDTVQEAYLKMPRGKMNEAIEYSPSKQSPDNEKSKKGDMASKVDAIPQASDIFCLPGSVDASFSPETPPLRHASNRFGKGFHDSPPHTEVSHQPVIDETEAQLQDRSQSSISRFAPGSQSSSTSCSKSPTDTITQTSKSGTTSVQPPPALSPRTPLKEIRPVKARPESSSSKPPTPPPPPTPPPKDHKPASVKPPPPPPPPSKNEPDVRDGPSTPPPPPLKEEPQVKAAPPPPPPPPPPPLAKDDSQVRARPPPPPPPPPCLSAKAEGPSTASTAPPPPPPPPSATPTSNMPNPSVPAAPPPPSAPAAPPPPSPLGKGGSKSGQGFLGSLSAAGDGSSSKGRMLSRTINSKNNAKKLKPLHWLKLSRAVQGSLWAETQKSGEASKAPEIDMSELESLFSAAVPSSGSTKKSNAQSAAAPKSDKVQLIEHRRAYNCEIMLSKVKVPLHDLMSSVLKLEESALDIDQVENIIKFCPTKEEMEQLKGYTGEKEKLGRCEQFFLELMQVPRVESKLRVFAFKIQFQSQVADLRKNLNVVNAAADEIKSSVKFKRVMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKVLADKLPDVLDFSKDLANLEPAAKIQLKILAEEMQAISKGLEKVVQELSLSENDGPMSETFRKNLKEFLSHAEAEVRSLASLYSRVGRNVDTLILYFGEDPSRCPFEQVVTTLHNFTGMFNKSHEENSKQLELEMKKTADGEKKKCEREKIIPAAIRTGNVQ 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60448g00005 1160 MobiDBLite consensus disorder prediction 670 714 - -
Stsc60448g00005 1160 PANTHER FORMIN-J 1 638 - -
Stsc60448g00005 1160 MobiDBLite consensus disorder prediction 416 438 - -
Stsc60448g00005 1160 MobiDBLite consensus disorder prediction 798 820 - -
Stsc60448g00005 1160 SMART it6_source 745 1155 IPR015425 -
Stsc60448g00005 1160 Gene3D - 199 340 - -
Stsc60448g00005 1160 Gene3D Protein tyrosine phosphatase superfamily 15 198 IPR029021 -
Stsc60448g00005 1160 MobiDBLite consensus disorder prediction 493 545 - -
Stsc60448g00005 1160 Pfam Formin Homology 2 Domain 749 1118 IPR015425 -
Stsc60448g00005 1160 MobiDBLite consensus disorder prediction 798 817 - -
Stsc60448g00005 1160 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 337 IPR035892 -
Stsc60448g00005 1160 MobiDBLite consensus disorder prediction 462 742 - -
Stsc60448g00005 1160 SMART PTEN_C2_2 197 336 IPR014020 -
Stsc60448g00005 1160 MobiDBLite consensus disorder prediction 568 662 - -
Stsc60448g00005 1160 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Stsc60448g00005 1160 SUPERFAMILY Formin homology 2 domain (FH2 domain) 758 1135 - -
Stsc60448g00005 1160 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Stsc60448g00005 1160 ProSiteProfiles Formin homology-2 (FH2) domain profile. 745 1144 IPR015425 -
Stsc60448g00005 1160 MobiDBLite consensus disorder prediction 722 742 - -
Stsc60448g00005 1160 Gene3D Formin, FH2 domain 743 1129 IPR042201 -
Stsc60448g00005 1160 ProSiteProfiles C2 tensin-type domain profile. 199 337 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60448g00005 Stsc-Chr60448 29966 37047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60448g00005 1 400 Protein tyrosine phosphatase (PTP) family AT5G58160 67.581 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60448g00005 - - aprc:113848377 1562.74