Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60448g00001 ATGGGTTTGGGAGTGTTTGGCACTGTTCTGATTTTGGGACTCTTGTTCAAGCATTTGGCTTCTCAGCAACCAAACACTGATGAGTTCTATGTGTTTGAGTTCTTGAAGAAAATGGCTTCCAATTCTTCTTCTTCTTTTTCCTCCTCACAAGCCTCAGCTTCAGTTTGTTCATGCCAAGGAGTTTTCTGTGACAACAACAAAGAACATGTTGTTGGCTTAAACTTTTCAGGTTTAGGCCTCACTGGCCCCATTCCTGATAACACCATAGGCAAGCTCAGCAAGCTTCAAACTTTGGATCTTAGCTGCAACAAAATCACAACTTTGCCTTCAGATTTTTGGAGTTTAAGCACTATCAAGAGCCTCAACCTCTCCACCAATCAGATTTCAGGTTCATTGACCAACAACATTGGCAACTTTGGTATGCTTGAAGCCATTGACTTGTCAAGCAACAACTTCACTGATGAAATTCCAGAAGCTATTGGATCCCTCATGAGTTTGAGAGTCCTCAAACTTGACCATAACAGATTTTCAAGAAGCATTCCTGCTGGGATTCTCAAGTGCCAGTCACTAGTTTCAATTGATCTCTCATCAAATCAGTTGAATGGAACACTTCCAACTGGTTTTGCTGCTGCTTTTCCTAAGCTCAAGACCTTAAACATTGCTGCCAATGACATCGATGGCCGAATCGTCGACATTTCAGGTTTCAATTCCATTCAAAGTCTCAACATATCTGGAAACTCCTTTCAGGGTTCTATCATGGGTGTGTTTCAGGAAAAGTTGGAGGTATTGGACCTAAGCAGAAACCAATTTCAAGGCCACATTTCTCAGGTACAATCCTACAATTGGTCTCATTTGGTTTATCTTGATTTGTCAGGGAATCAGCTGAGTGGTGAGATTTTCCAAAACTTGTTGAGTGAGTCCTTGTTGAATCTGAAGCATCTCAATCTTGCACACAATAGATTCTCCAAACAGAAATTCCCAACAAAGATTGAAAAGCTTAAGGGATTGGAGTATCTGAACTTGTCCAAAACCAATCTTTTAGGACAAATCCCTGATGAAATCTCACAACTGAGTAATCTCAATGCTCTTGATCTTTCTATGAATAGTCTTGCTGACATTCACCCTGATGTGCTTGAATCAGCATTCTTTGGATCAGTGAACAGCTGTCCAATTGCTGCAGACCCACATTTCTTCAGGAGAAAGAACAATGGACACAACAAGGGAATGGAGCTAGCATTGGTGTTAACCTTCTCAATGATCTTCATGCTTGCTGGCCTCTTGTTCTTAGCATTTGGCTGCCGAAGGAAATCAAAAATGTGGGAAGTTAAACAAACTTCATACAAAGAAGAGCAGAACATTTCAGGGCCTTTCTCATTCCAGACTGATTCAACAACCTGGGTGGCTGATGTTAAGCAGGCAACATCAGTGCCAGTGGTGATCTTTGAGAAGCCTTTGTTGAACATCACATTTGCAGACTTATTGGCTGCAACCTCGAATTTCGACCGAGGTACTCTCTTGGCCGAAGGAAAATTCGGTCCGGTCTACAGTGGATTCCTCCCTGGTGGCATTCATGTAGCAGTTAAAGTTTTGGTGGTTGGTTCTACATTGACAGATCAAGAAGCTGCAAGAGAGCTTGAGTTTCTAGGCAGAATCAAGCATCCTAATCTTGTTCCTTTAACTGGATATTGTGTAGCTGGGGATCAAAGGATTGCTATATATGATTATATGGAGAATGGAAACTTGCAAAATCTGCTATATGATTTGCCACTTGGTGTGCAAAGCACTGATGATTGGAGCACAGATACATGGGATGAATCAGACAACAATGGAATTCAGAATGCTGGCTCTGAAGGATTGCTCACAACTTGGAGATTTCGCCACAAAATAGCCCTTGGAACTGCCCGAGCACTTGCATTCTTGCATCATGGATGCTCTCCTCCAATCATTCACAGAGCAGTTAAGGCCAGCAGTGTTTATTTGGACTATGATCTCGAGCCGAGGCTGTCTGATTTCGGCCTGGCTAAGATCTTTGGAAGTGGCTTGGACGAGGAGATTGCTCTTGGATCACCCGGTTATGTTCCTCCAGAGTTTTCTCAACAGGAATTCGACTCGCCAACTACGAAATCTGATGTGTATTGTTATGGAGTTGTGCTCTTTGAGCTAGTAACCGGAAAGAAGCCCGTGGGAGATGATTACCCTGATGATAAGGAATCAACTTTGGTTAGCTGGGTGAGAGGACTAGTTAAAAAGAATCAAGCTTCAAGAGCAATTGATCCAAAGATTAGGGACACAGGACTAGATGAACAAATGGAGGAGGCTCTCAAGATTGGTTATCTTTGCACTGCTGACTTGCCTGCCAAGCGACCAACAATGCAGCAGATTGTTGGACTTCTAAAAGACATTGAACCTGTTTCTTCTAATTAG 2424 0.4253 MGLGVFGTVLILGLLFKHLASQQPNTDEFYVFEFLKKMASNSSSSFSSSQASASVCSCQGVFCDNNKEHVVGLNFSGLGLTGPIPDNTIGKLSKLQTLDLSCNKITTLPSDFWSLSTIKSLNLSTNQISGSLTNNIGNFGMLEAIDLSSNNFTDEIPEAIGSLMSLRVLKLDHNRFSRSIPAGILKCQSLVSIDLSSNQLNGTLPTGFAAAFPKLKTLNIAANDIDGRIVDISGFNSIQSLNISGNSFQGSIMGVFQEKLEVLDLSRNQFQGHISQVQSYNWSHLVYLDLSGNQLSGEIFQNLLSESLLNLKHLNLAHNRFSKQKFPTKIEKLKGLEYLNLSKTNLLGQIPDEISQLSNLNALDLSMNSLADIHPDVLESAFFGSVNSCPIAADPHFFRRKNNGHNKGMELALVLTFSMIFMLAGLLFLAFGCRRKSKMWEVKQTSYKEEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYSGFLPGGIHVAVKVLVVGSTLTDQEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWDESDNNGIQNAGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDEEIALGSPGYVPPEFSQQEFDSPTTKSDVYCYGVVLFELVTGKKPVGDDYPDDKESTLVSWVRGLVKKNQASRAIDPKIRDTGLDEQMEEALKIGYLCTADLPAKRPTMQQIVGLLKDIEPVSSN 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60448g00001 807 Pfam Leucine rich repeat 238 295 IPR001611 GO:0005515
Stsc60448g00001 807 Pfam Leucine rich repeat 84 128 IPR001611 GO:0005515
Stsc60448g00001 807 Pfam Leucine rich repeat 142 200 IPR001611 GO:0005515
Stsc60448g00001 807 ProSiteProfiles Protein kinase domain profile. 500 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60448g00001 807 FunFam Nuclear pore complex protein NUP107 25 182 - -
Stsc60448g00001 807 Gene3D Ribonuclease Inhibitor 182 279 IPR032675 -
Stsc60448g00001 807 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 233 377 - -
Stsc60448g00001 807 Gene3D Phosphorylase Kinase; domain 1 460 575 - -
Stsc60448g00001 807 SUPERFAMILY Protein kinase-like (PK-like) 477 798 IPR011009 -
Stsc60448g00001 807 PRINTS Leucine-rich repeat signature 285 298 - -
Stsc60448g00001 807 PRINTS Leucine-rich repeat signature 357 370 - -
Stsc60448g00001 807 Pfam Protein tyrosine and serine/threonine kinase 504 796 IPR001245 GO:0004672|GO:0006468
Stsc60448g00001 807 SMART LRR_typ_2 163 187 IPR003591 -
Stsc60448g00001 807 SMART LRR_typ_2 357 380 IPR003591 -
Stsc60448g00001 807 SMART LRR_typ_2 308 333 IPR003591 -
Stsc60448g00001 807 SMART LRR_typ_2 92 115 IPR003591 -
Stsc60448g00001 807 FunFam Putative LRR receptor-like serine/threonine-protein kinase 461 575 - -
Stsc60448g00001 807 SUPERFAMILY L domain-like 50 378 - -
Stsc60448g00001 807 FunFam Calmodulin-binding receptor kinase CaMRLK 258 374 - -
Stsc60448g00001 807 Gene3D Ribonuclease Inhibitor 27 181 IPR032675 -
Stsc60448g00001 807 ProSiteProfiles Leucine-rich repeat profile. 94 115 IPR001611 GO:0005515
Stsc60448g00001 807 Gene3D Ribonuclease Inhibitor 280 396 IPR032675 -
Stsc60448g00001 807 Gene3D Transferase(Phosphotransferase) domain 1 576 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60448g00001 Stsc-Chr60448 3285 5883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60448g00001 66 802 Receptor kinase-like Gene Family AT4G39400 35.927 3.93e-120 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Stsc60448g00001 PK_Tyr_Ser-Thr 1.9e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60448g00001 - - adu:107459185 1415.98