Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60447g00025 ATGGATTGGGTAAGAGGAGACCCTATTGGTCGAGGGAGCTTCGCCACCGTTAGTTTAGCTCTTCCAAGAAACGGTTGTGCTGCTAATTCATTGCCTTATCTAACGGCAGCGAAGTCCAGCGACGCCGACGCCTCTTACTGGCTAAAGAACGAGAGGCACGTGCTAGACCGCCTCGGCGGCACGTGCCCGCGAATCATCACCTGCTTTGGCGACGACTACACCTTGGAGAATGGCCGCCAATACTACAACCTCTTCCTCGAGTACGCCTCCCGCGGCAGCCTCTCCGACGAGCTTCGCCGCCGCGGAGGCCGTATCTCGGAACCCGAAATTCGGCACCACGTGAAGTCCATCGTTGAAGGTCTGGATCATATTCACAAGAACGGATTCGTACACTGCGATATAAAGCTTCAGAACATACTCATCTTCGAAAACGGGCAAGTTAAGATTGCTGATTTTGGTTTAGCGAAAGAAACAGGGGAAGAAGAAGAGGGGAATGGCAAGAAGTGTTTCGGATGCAGGGGAACTCCTATGTTTATGCCGCCGGAATCGGTTAACGACGGCGAGTGCGAGTCTCCGGCGGATATTTGGGCGTTGGGGTGCACGGTGGTGGAGATGGTGACCGGAAAGCCGGCATGGAACGTTGCGAAAGATTCGAGCATTTGGTCGTTGCTGCTTCGGATCGGAACAGGGGAAGAAGTGCCAGCAATACCGGATGGAATTTCGAAAGAAGGGAAGGATTTCTTGGACAAGTGTTTTGTTAAAGATCCTAAGAAGAGATGGACGGCTCAGATGCTTCTAAATCATCCCTTTCTAGCTTTTGATTCTGATACTGTTTCATTGAAACTTGGTGTGATTGCCGACGAAAACGAATCGCCAAGAACCCACTTTGATTTTCCTGATTGGGTTTCTAGTCTTAATTCTTCTTCTGTTCCGAGCTCAGACGAACACGATTGGGATCTTGATTCGGCTGTGGACCGGCTTCGCAAGCTTGCCACCGGGGATCGGATGCCGGTGAATTGGCCGGAATCCGATGGGTGGACAAGTGTCAGGTGGAATTAA 1059 0.5146 MDWVRGDPIGRGSFATVSLALPRNGCAANSLPYLTAAKSSDADASYWLKNERHVLDRLGGTCPRIITCFGDDYTLENGRQYYNLFLEYASRGSLSDELRRRGGRISEPEIRHHVKSIVEGLDHIHKNGFVHCDIKLQNILIFENGQVKIADFGLAKETGEEEEGNGKKCFGCRGTPMFMPPESVNDGECESPADIWALGCTVVEMVTGKPAWNVAKDSSIWSLLLRIGTGEEVPAIPDGISKEGKDFLDKCFVKDPKKRWTAQMLLNHPFLAFDSDTVSLKLGVIADENESPRTHFDFPDWVSSLNSSSVPSSDEHDWDLDSAVDRLRKLATGDRMPVNWPESDGWTSVRWN 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60447g00025 352 ProSiteProfiles Protein kinase domain profile. 3 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60447g00025 352 ProSitePatterns Protein kinases ATP-binding region signature. 9 38 IPR017441 GO:0005524
Stsc60447g00025 352 SUPERFAMILY Protein kinase-like (PK-like) 3 294 IPR011009 -
Stsc60447g00025 352 Gene3D Transferase(Phosphotransferase) domain 1 2 304 - -
Stsc60447g00025 352 SMART serkin_6 3 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60447g00025 352 Pfam Protein kinase domain 6 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60447g00025 352 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 330 - -
Stsc60447g00025 352 CDD STKc_MAPKKK 2 271 - -
Stsc60447g00025 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60447g00025 Stsc-Chr60447 206567 207625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60447g00025 1 350 MAP Kinase Kinase Kinase AT5G67080 49.584 5.92e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc60447g00025 Pkinase 1.1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60447g00025 - - gmx:100798607 451.825