Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60447g00015 ATGGACGTTGACATGATTTCAATGATGACGATGATGCACATGGAAAAGTTTCCTGAATTATCCGAATCCCTTTACACCACAACTCCCACTACCACCACCACTGTTCCCACCATATTCAACGCACCACTAGCACCGCCGTGTTTGATTGATCCACCGCCGTCCAACATTGTCAACTTCCCCATCCAACAACAAACGGTTGCATTCAAGAACCCTCGCCATTGTTCATCATCAAGGGAGATGAAAAGTTCTTCGATGGCGGCAATGAGAGAAATGATATTCCGAATAGCGGTGATGCAGCCTGTCCACATCGACCCGGAAGCCGTAAAGGCTCCGAAGCGGAGGAATGTGAAGATCTCGAAGGATCCTCAGAGCGTGGCGGCGCGCCACCGGAGGGAAAGGATAAGCGAGAGGATAAGGATCTTGCAGAGATTGGTGCCAGGTAGTACCAAAATGGACACTGCTTCTATGTTGGATGAGGCAGTGCACTATGTGAAGTTCTTGAAGAAGCTGGTGCAGACGCTGGAACAAGCAGAAGCAAGTAGAATAACAAGAACCCTTGGTGGTGGGTTTTCTTCTTCTAACAACAATGGCAATAATGGTTTCAGCGTTTTCCCTTTCCAGAATCAATCACCATCGTCTTTGGCCTCTTCGTCACAGTCGCTGTCTCCGTCTCCGCCGCTTCCGTCGGTCCCTGCTGAGATCCTCTTACACCTTCTCCCTTCCTTCAATTCCTCCTTCCCTTCCACCGATACTCTCACCACATTCACCGAGATCCGATCCTTCTATCTATTTCCCTCCGAGATCGATATCCGCCCTAGCCTCGCCGTGGACCTCCTCTTCAGCGTCGGACGCGGCGCCCTCGCTGCTGCCATCATGTTCTCAAGCTGCTACGAGTTCCGACGACTATTACCTCGACGATGA 921 0.5092 MDVDMISMMTMMHMEKFPELSESLYTTTPTTTTTVPTIFNAPLAPPCLIDPPPSNIVNFPIQQQTVAFKNPRHCSSSREMKSSSMAAMREMIFRIAVMQPVHIDPEAVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGSTKMDTASMLDEAVHYVKFLKKLVQTLEQAEASRITRTLGGGFSSSNNNGNNGFSVFPFQNQSPSSLASSSQSLSPSPPLPSVPAEILLHLLPSFNSSFPSTDTLTTFTEIRSFYLFPSEIDIRPSLAVDLLFSVGRGALAAAIMFSSCYEFRRLLPRR 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60447g00015 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 167 IPR011598 GO:0046983
Stsc60447g00015 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 177 IPR036638 GO:0046983
Stsc60447g00015 306 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 62 222 IPR045843 GO:0003700|GO:0006355
Stsc60447g00015 306 FunFam BHLH transcription factor 121 185 - -
Stsc60447g00015 306 Pfam Helix-loop-helix DNA-binding domain 128 167 IPR011598 GO:0046983
Stsc60447g00015 306 SMART finulus 124 173 IPR011598 GO:0046983
Stsc60447g00015 306 Gene3D - 117 186 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60447g00015 Stsc-Chr60447 123485 128212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60447g00015 85 176 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 91.304 2.55e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60447g00015 HLH 9.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60447g00015 - - gmx:100805427 198.749