Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60446g00032 GCACAACTGTTAGATGCGGAAATATTACCGTTGGTTGTTAGCATATCTGGGAGAGTCAGCTCTGAAACCCCAATTCACTGCGAGTTCAGTGGTTTAAGAGGAGTAATAGTTGAAGAAACGGCAGAGCAACATTTTCTGAAACACAATGATGCTGGTTCATGGATACAAGATTCTGCTTTAATGCTATCCATGAGTAAAGAAGTTCCTTGGTATCTGGATGATGGAAGTGACCGCGTGCATGTGGTAGGAGCCCGTGGTGCCACAGGATTTGTATTACCTGTTGCAAGTGAGGTGTTTGAAGAGTCCGGTAGGTCACTTGTACGTGGTACATTGGATTATCTCCAAGGTCTCAAGATGCTTGGGGTAAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTCGTTGGTGAGGCTGCTAAAGATGACATTGGGACCATTCGAATTCAGCGACCCCACAAAGGGCCATTTTACGTCTCTCCCAAAACACTCGATCAACTTATTGCTAATCTGGGGAAATGGGCAAGGTGGTATAAATATGCTTCTATGGGCTTTACACTATTTGGTGCTTACCTAATAGCTAAGCATGCTATTCGGTTCATCTTGGAAAGACGGCGTCGTTGTGAACTGCAAAAAAGGGTTCTTGCGGCTGCTGCTAAGAGGCAAGGACAAGATAATGAAGGTGAAAAAGCTGACACCTTACGGGACGGCACTAAAAGGGACCGTTCAATGCCAGACTTGTGTGTGATATGCCTTGAGCACGAATATAATGCCGTTTTCGTACCGTGTGGGCACATGTGCTGCTGTACTACTTGCTGTTCACACTTAACCAATTGTCCTCTTTGCCGGAGACGGATCGAACAAGTAGTGAAGACTTTTCGTCATTGA 894 0.4541 AQLLDAEILPLVVSISGRVSSETPIHCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGSDRVHVVGARGATGFVLPVASEVFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDIGTIRIQRPHKGPFYVSPKTLDQLIANLGKWARWYKYASMGFTLFGAYLIAKHAIRFILERRRRCELQKRVLAAAAKRQGQDNEGEKADTLRDGTKRDRSMPDLCVICLEHEYNAVFVPCGHMCCCTTCCSHLTNCPLCRRRIEQVVKTFRH 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60446g00032 297 SUPERFAMILY RING/U-box 249 291 - -
Stsc60446g00032 297 ProSiteProfiles Zinc finger RING-type profile. 250 285 IPR001841 -
Stsc60446g00032 297 PANTHER - 1 264 IPR044231 GO:0004842|GO:0016567
Stsc60446g00032 297 CDD RING-HC_LRSAM1 250 293 - -
Stsc60446g00032 297 Pfam Zinc finger, C3HC4 type (RING finger) 248 291 - -
Stsc60446g00032 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 296 IPR013083 -
Stsc60446g00032 297 Pfam E3 Ubiquitin ligase 43 191 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60446g00032 Stsc-Chr60446 185467 210348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60446g00032 1 230 C3H Transcription Factor Family AT1G63900 76.724 1.53e-126 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60446g00032 K15688 - qsa:O6P43_010668 530.791