Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60445g00004 ATGTATCCGAGGCTGATACACCCTCATGAAGCAGCAGGGCTTGTTGGGCAAGAAGATGTTCAAGTTGCTGGTGGCGCCTCCAATCTCTCACACAAGGGAGACCCATGTCTTGTTCTCACTGCTGATCCAAAACCAAGACTTCGTTGGACTCAGGACCTCCATGAACGTTTTGTTGATGCTGTTACTCAGCTCGGAGGTGCTAGTAAAGCTACGCCGAAAGCAATCATGCGGACCATGAATGTCAAGGGTTTGACTCTCTTTCATTTGAAGAGTCATCTTCAGAAATATAGACTCGGTAAGCAATCAGGGAAAGATATGGGTGAGGGATGCAAAGATGGATTATCCGGTTCCTACTTAGAAAGTCCTGGTACTGACAACTCTTCTCCAAAGTTGCCAACTTCTGATACCAATGAGGGTTATGAAATCAAGGAAGCCTTAAGAGCACAGATGGAGGTGCAAAGCAAACTACATTTGCAAGTAGAGGCAGAGAAGCACTTGCAAATTCGCCAAGACGCAGAGCAAAGATACATGGTCATGCTTGAAAGAGCTTGTAAGATGCTAGCTGATCAATTCATTGGCGCTACAGTCATCGACACCGACAACCAAAAGTTCCAAGGAGTTGGGAGTAAAGCACCAAGAGCTCCCATGGTTGATCCTCTTGGATTTTTCTCCATGCCATCGACTGAAGTGGCTGGAGTCAATGTCCCGGAAGAAGAAATACCTCATAGCCTCCCGCCCCAGAGGGCCGACTGTTCAACCGAAAGTTGTCTAACCTCACACGAGACTACTGGGGGATTGATTTTAGAAGGATCGCCTGGTGAGGGGAAAAGGAGACTGCTAGGCATGGACTCTATGGCAGCACCTTTGATCTGGACCGAAGCTAAGATGAGGACTCAAGCCATCAATGTAGCCCAAGGTAACCCTCATGGAATAACTAGGTATGCCGGCATGTAG 954 0.4769 MYPRLIHPHEAAGLVGQEDVQVAGGASNLSHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEGCKDGLSGSYLESPGTDNSSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQDAEQRYMVMLERACKMLADQFIGATVIDTDNQKFQGVGSKAPRAPMVDPLGFFSMPSTEVAGVNVPEEEIPHSLPPQRADCSTESCLTSHETTGGLILEGSPGEGKRRLLGMDSMAAPLIWTEAKMRTQAINVAQGNPHGITRYAGM 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60445g00004 317 FunFam Myb family transcription factor 43 101 - -
Stsc60445g00004 317 Gene3D - 43 101 - -
Stsc60445g00004 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 101 IPR017930 -
Stsc60445g00004 317 Pfam Myb-like DNA-binding domain 47 97 IPR001005 -
Stsc60445g00004 317 Pfam MYB-CC type transfactor, LHEQLE motif 141 186 IPR025756 -
Stsc60445g00004 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 263 IPR044848 GO:0003700
Stsc60445g00004 317 MobiDBLite consensus disorder prediction 101 135 - -
Stsc60445g00004 317 NCBIfam myb-like DNA-binding domain, SHAQKYF class 44 99 IPR006447 GO:0003677
Stsc60445g00004 317 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Stsc60445g00004 317 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60445g00004 Stsc-Chr60445 11070 15147 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60445g00004 33 259 G2-like Transcription Factor Family AT3G24120 45.798 4.13e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc60445g00004 Myb_DNA-binding 5.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60445g00004 - - gmx:100786397 552.747